Parental gene:

RPL9, ENSCJAG00000000723

Aliases:None
Description:ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:151383250..151387853(+)


>ENSCJAG00000000723
ATGAAGACCATTCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTCGACATTACCCTGAAGGGACGCACAGTTATCGT
GAAGGGCCCCAGAGGAACCCTGCGGAGGGACTTCAATCACATCAATGTAGAACTCAGTCTTCTTGGAAAGAAAAAAAAGA
GGCTCCGGGTTGACAAATGGTGGGGTAACCGAAAGGAACTGGCTACGGTTCGGACTATTTGTAGTCACGTACAGAACATG
ATCAAGGGTGTTACGCTGGGCTTCCGTTACAAGATGAGGTCTGTGTATGCTCACTTCCCCATCAACGTCGTTATCCAGGA
GAACGGGTCTCTTGTTGAAATCCGAAATTTCTTGGGTGAAAAATACATCCGCAGGGTTCGAATGAGACCAGGTGTTGCTT
GTTCAGTATCTCAAGCCCAGAAAGATGAATTAATCCTTGAAGGAAATGACATTGAGCTTGTGTCAAATTCAGCGGCTTTG
ATTCAGCAAGCTACAACAGTGAAAAACAAGGATATCCGGAAATTTTTGGATGGTATCTATGTCTCTGAAAAAGGAACTGT
TCAGCAGGCTGATGAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 294 .43 RPM
SRP051959_skeletal_muscle 188 .40 RPM
SRP051959_lymph_node 348 .82 RPM
SRP051959_lung 203 .70 RPM
SRP051959_liver 289 .47 RPM
SRP051959_kidney 211 .30 RPM
SRP051959_heart 184 .86 RPM
SRP051959_colon 217 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000014518 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000016008 ortholog_one2one 28 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2many 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 possible_ortholog 18 retrogenes
Equus caballus ENSECAG00000016489 ortholog_one2one 7 retrogenes
Erinaceus europaeus ENSEEUG00000004394 possible_ortholog 39 retrogenes
Felis catus ENSFCAG00000012284 ortholog_one2one 34 retrogenes
Homo sapiens ENSG00000163682 ortholog_one2one 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 ortholog_one2one 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000012021 possible_ortholog 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_many2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 ortholog_one2one 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 possible_ortholog 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2many 7 retrogenes
Nomascus leucogenys ENSNLEG00000017100 ortholog_one2one 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Pongo abelii ENSPPYG00000014675 ortholog_one2one 10 retrogenes
Pteropus vampyrus ENSPVAG00000000919 possible_ortholog 49 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2many 8 retrogenes
Sus scrofa ENSSSCG00000025192 ortholog_one2one 15 retrogenes
Tupaia belangeri ENSTBEG00000006042 possible_ortholog 18 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_392 67.59 55.73
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2. retro_cjac_593 79.08 100.00
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3. retro_cjac_627 94.05 95.31
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4. retro_cjac_650 98.96 100.00
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5. retro_cjac_684 75.63 100.00
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6. retro_cjac_690 85.71 68.75
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7. retro_cjac_709 62.62 55.21
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8. retro_cjac_784 75.77 100.00
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9. retro_cjac_825 83.94 100.00
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10. retro_cjac_1075 63.48 59.38
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11. retro_cjac_1115 65.34 90.62
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12. retro_cjac_1335 67.88 100.00
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13. retro_cjac_1589 61.05 96.35
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14. retro_cjac_1735 85.88 92.19
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15. retro_cjac_1780 64.17 61.46
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16. retro_cjac_1872 78.46 100.00
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17. retro_cjac_2166 94.79 99.48
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18. retro_cjac_2549 95.12 85.42
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19. retro_cjac_2554 85.71 68.23
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20. retro_cjac_2621 80.35 89.58
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21. retro_cjac_2637 66.67 65.10
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22. retro_cjac_2741 58.42 51.04
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23. retro_cjac_2826 91.53 91.67
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24. retro_cjac_2847 78.97 100.00
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25. retro_cjac_3069 65.45 97.40
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26. retro_cjac_3070 60.51 98.96
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27. retro_cjac_3103 83.33 74.48
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28. retro_cjac_3134 59.18 74.48
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29. retro_cjac_3245 79.37 96.88
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Download FASTA sequences of all ENSCJAG00000000723 retrocopies