Parental gene:

RPL9, ENSFCAG00000012284

Aliases:None
Description:ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Organism:Cat (Felis catus)
Coordinates:B1:172477467..172482308(+)


>ENSFCAG00000012284
ATGAAGACCATTCTCAGCAATCAAACTGTCGACATTCCGGAAAATGTCGACATCACTCTCAAGGGACGTACCGTTATTGT
GAAGGGACCCAGAGGAACCCTGCGAAGGGACTTCAATCACATCAATGTAGAACTCAGTCTTCTTGGAAAGAAAAAGAAGA
GGCTCCGTGTTGACAAATGGTGGGGAAATAGAAAAGAACTGGCTACTGTCCGTACTATCTGTAGTCATGTACAGAACATG
ATCAAGGGTGTTACATTGGGCTTCCGTTACAAGATGAGGTCTGTGTATGCCCACTTCCCCATCAACGTTGTTATTCAGGA
GAATGGCTCTCTCGTTGAAATCCGAAATTTCTTGGGTGAGAAATACATACGCAGGGTTCGGATGAGGCCAGGTGTTGCTT
GTTCCGTATCTCAAGCCCAGAAAGATGAGTTAATTCTTGAAGGAAATGACATTGAACTTGTATCAAACTCAGCTGCTTTG
ATTCAGCAAGCCACAACAGTTAAAAACAAGGATATCAGGAAATTTTTGGATGGTATCTATGTTTCTGAAAAAGGAACTGT
TCAGCAGGCTGATGAATAA

Library Parental gene expression (RPM)
SRP017611_liver 281 .84 RPM
SRP017611_kidney 610 .51 RPM
SRP017611_brain 179 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000014518 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000016008 ortholog_one2one 28 retrogenes
Callithrix jacchus ENSCJAG00000000723 ortholog_one2one 29 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2many 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 possible_ortholog 18 retrogenes
Equus caballus ENSECAG00000016489 ortholog_one2one 7 retrogenes
Erinaceus europaeus ENSEEUG00000004394 possible_ortholog 39 retrogenes
Homo sapiens ENSG00000163682 ortholog_one2one 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 ortholog_one2one 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000012021 ortholog_one2many 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_many2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 ortholog_one2one 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 ortholog_one2many 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2many 7 retrogenes
Nomascus leucogenys ENSNLEG00000017100 ortholog_one2one 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Pongo abelii ENSPPYG00000014675 ortholog_one2one 10 retrogenes
Pteropus vampyrus ENSPVAG00000000919 possible_ortholog 49 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2many 8 retrogenes
Sus scrofa ENSSSCG00000025192 ortholog_one2one 15 retrogenes
Tupaia belangeri ENSTBEG00000006042 ortholog_one2many 18 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_160 74.75 51.04
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2. retro_fcat_167 57.14 65.62
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3. retro_fcat_169 73.20 100.00
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4. retro_fcat_272 78.02 93.75
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5. retro_fcat_330 76.64 55.73
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6. retro_fcat_341 60.28 72.40
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7. retro_fcat_356 55.73 68.23
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8. retro_fcat_403 74.61 100.00
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9. retro_fcat_491 71.82 56.77
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10. retro_fcat_651 63.64 73.96
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11. retro_fcat_744 71.04 93.23
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12. retro_fcat_747 72.36 64.06
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13. retro_fcat_748 71.03 55.73
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14. retro_fcat_788 82.14 57.29
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15. retro_fcat_871 51.18 65.62
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16. retro_fcat_874 67.36 98.44
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17. retro_fcat_880 62.75 53.12
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18. retro_fcat_914 72.54 100.00
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19. retro_fcat_1010 70.54 67.19
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20. retro_fcat_1076 66.39 62.50
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21. retro_fcat_1093 72.82 100.00
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22. retro_fcat_1121 74.26 51.04
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23. retro_fcat_1183 81.54 66.67
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24. retro_fcat_1304 77.21 70.31
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25. retro_fcat_1329 80.95 98.44
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26. retro_fcat_1531 75.84 77.08
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27. retro_fcat_1541 71.53 70.83
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28. retro_fcat_1560 68.75 75.00
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29. retro_fcat_1597 79.17 61.98
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30. retro_fcat_1623 77.32 100.00
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31. retro_fcat_1675 73.08 67.19
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32. retro_fcat_1700 75.72 89.58
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33. retro_fcat_1786 73.33 99.48
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34. retro_fcat_1828 61.98 61.46
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Download FASTA sequences of all ENSFCAG00000012284 retrocopies