Parental gene:

ENSDNOG00000007411

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3126:23698..27818(-)


>ENSDNOG00000007411
ATGAAGACCATTCTCAGCAACCAGACTGTCGACATTCCAGAAAATGTCGACATCACGCTGAAGGGACGCACAGTTATTGT
GAAGGGCCCCAGAGGAACCCTGCGGAGGGACTTCAATCACATCAATGTAGAACTCAGTCTACTTGGGAAGAAAAAGAAGA
GGCTTCGGGTTGACAAATGGTGGGGAAATAGAAAGGAACTGGCCACAGTTCGCACTATCTGTAGTCATGTACAGAACATG
ATCAAGGGTGTTACATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTGCTT
GTTCATTATCTCAAGCCCAGAAAGATGAGTTAATTCTTGAAGGAAATGATATTGAACTTGTATCAAATTCA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 63 .20 RPM
SRP012922_cerebellum 20 .76 RPM
SRP012922_heart 32 .95 RPM
SRP012922_kidney 44 .90 RPM
SRP012922_liver 31 .27 RPM
SRP012922_lung 55 .13 RPM
SRP012922_quadricep_muscle 35 .14 RPM
SRP012922_spleen 72 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000014518 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000016008 possible_ortholog 28 retrogenes
Callithrix jacchus ENSCJAG00000000723 possible_ortholog 29 retrogenes
Cavia porcellus ENSCPOG00000004543 possible_ortholog 15 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2many 1 retrogene
Dipodomys ordii ENSDORG00000001088 possible_ortholog 6 retrogenes
Equus caballus ENSECAG00000016489 possible_ortholog 7 retrogenes
Erinaceus europaeus ENSEEUG00000004394 ortholog_one2one 39 retrogenes
Felis catus ENSFCAG00000012284 possible_ortholog 34 retrogenes
Homo sapiens ENSG00000163682 possible_ortholog 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 possible_ortholog 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000012021 possible_ortholog 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_many2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 possible_ortholog 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 possible_ortholog 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2many 7 retrogenes
Mus musculus ENSMUSG00000047215 possible_ortholog 2 retrogenes
Nomascus leucogenys ENSNLEG00000017100 possible_ortholog 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Procavia capensis ENSPCAG00000005834 possible_ortholog 22 retrogenes
Pongo abelii ENSPPYG00000014675 possible_ortholog 10 retrogenes
Rattus norvegicus ENSRNOG00000026716 possible_ortholog 3 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2many 8 retrogenes
Sus scrofa ENSSSCG00000025192 possible_ortholog 15 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000002077 possible_ortholog 13 retrogenes
Tupaia belangeri ENSTBEG00000006042 possible_ortholog 18 retrogenes
Tursiops truncatus ENSTTRG00000014289 possible_ortholog 13 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_82 74.39 50.96
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2. retro_dnov_282 70.59 52.23
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3. retro_dnov_407 72.73 54.78
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4. retro_dnov_437 88.37 54.78
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5. retro_dnov_450 66.27 51.59
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6. retro_dnov_615 65.93 54.78
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7. retro_dnov_787 75.29 52.23
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8. retro_dnov_975 84.88 54.78
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9. retro_dnov_1298 56.98 54.78
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10. retro_dnov_1560 62.64 54.78
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11. retro_dnov_1684 56.82 54.78
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12. retro_dnov_1845 64.37 53.50
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13. retro_dnov_1877 71.08 52.87
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14. retro_dnov_1936 70.11 54.78
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15. retro_dnov_2148 69.14 50.96
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16. retro_dnov_2277 94.19 54.78
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17. retro_dnov_2624 66.67 54.78
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18. retro_dnov_2659 70.11 54.78
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Download FASTA sequences of all ENSDNOG00000007411 retrocopies