Parental gene:

RPL9, ENSSSCG00000025192

Aliases:None
Description:ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Organism:Pig (Sus scrofa)
Coordinates:8:32308211..32314218(-)


>ENSSSCG00000025192
ATGAAGACCATTCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTCGACATCACACTAAAAGGACGCACAGTCATTGT
GAAGGGCCCCAGAGGCACTCTGAGGAGGGACTTCAACCACATCAATGTAGAACTCAGTCTCCTTGGAAAGAAAAAGAAGA
GGCTCCGGGTTGACAAATGGTGGGGAAATAGAAAGGAACTGGCAACTGTTCGCACCATCTGTAGTCACGTACAGAATATG
ATCAAGGGTGTTACACTGGGCTTCCGTTACAAGATGAGGTCTGTGTATGCTCACTTCCCCATCAACGTCGTTATTCAGGA
GAATGGTTCTCTTGTTGAAATCCGAAATTTTTTGGGTGAAAAATATATCCGCAGGGTTCGGATGAGGCCAGGGGTTGCTT
GTTCAGTATCTCAAGCCCAGAAAGATGAGCTGATTTTAGAAGGAAATGACATTGAACTTGTATCAAATTCAGCTGCTTTG
ATTCAGCAAGCCACAACTGTTAAGAACAAGGATATCAGAAAATTTTTGGATGGTATCTATGTTTCTGAAAAAGGAACAGT
TCAGCAGGCTGATGAGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 118 .79 RPM
SRP014902_testis 511 .75 RPM
SRP018856_adipose 755 .73 RPM
SRP018288_kidney 438 .94 RPM
SRP018288_lung 469 .83 RPM
SRP018288_liver 412 .89 RPM
SRP018288_heart 528 .95 RPM
SRP035408_liver 327 .05 RPM
SRP035408_brain 390 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2one 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000014518 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000016008 ortholog_one2one 28 retrogenes
Callithrix jacchus ENSCJAG00000000723 ortholog_one2one 29 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2one 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 possible_ortholog 18 retrogenes
Equus caballus ENSECAG00000016489 ortholog_one2one 7 retrogenes
Erinaceus europaeus ENSEEUG00000004394 possible_ortholog 39 retrogenes
Felis catus ENSFCAG00000012284 ortholog_one2one 34 retrogenes
Homo sapiens ENSG00000163682 ortholog_one2one 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 ortholog_one2one 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000012021 ortholog_one2many 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_one2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 ortholog_one2one 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 ortholog_one2many 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000017100 ortholog_one2one 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Pongo abelii ENSPPYG00000014675 ortholog_one2one 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2one 8 retrogenes
Tupaia belangeri ENSTBEG00000006042 ortholog_one2many 18 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_272 68.72 100.00
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2. retro_sscr_316 72.82 52.08
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3. retro_sscr_411 74.55 84.38
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4. retro_sscr_826 80.58 71.88
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5. retro_sscr_886 67.10 79.17
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6. retro_sscr_920 58.93 84.90
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7. retro_sscr_921 58.93 84.90
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8. retro_sscr_972 80.12 84.90
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9. retro_sscr_1018 76.92 99.48
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10. retro_sscr_1021 69.77 87.50
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11. retro_sscr_1065 80.11 89.06
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12. retro_sscr_1091 68.72 100.00
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13. retro_sscr_1160 74.09 100.00
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14. retro_sscr_1196 81.87 100.00
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15. retro_sscr_1199 98.96 100.00
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Download FASTA sequences of all ENSSSCG00000025192 retrocopies