Parental gene:

RPL9, ENSPPYG00000014675

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:4:40501089..40505777(-)


>ENSPPYG00000014675
ATGAAGACCATTCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTCGACATTACTCTGAAGGGACGCACAGTTATTGT
GAAGGGCCCCAGAGGAACCCTGCGGAGGGACTTCAATCACATCAATGTAGAACTCAGTCTTCTTGGAAAGAAAAAAAAGA
GGCTCCGGGTTGACAAATGGTGGGGTAACAGAAAGGAACTGGCTACCGTTCGGACTATTTGTAGTCATGTACAGAACATG
ATCAAGGGAGTTACACTGGGCTTCCGTTACAAGATGAGGTCTGTGTATGCTCACTTCCCCATCAACGTCGTTATCCAGGA
GAATGGGTCTCTTGTTGAAATCCGAAATTTCTTGGGTGAAAAATACATCCGCAGGGTTCGGATGAGACCAGGTGTTGCTT
GTTCGGTATCTCAAGCCCAGAAAGATGAATTAATCCTTGAAGGAAATGACATTGAGCTTGTTTCAAATTCAGCGGCTTTG
ATTCAGCAAGCCACAACAGTTAAAAACAAGGATATCAGGAAATTTTTGGATGGTATCTATGTCTCTGAAAAAGGAACTGT
TCAGCAGGCTGATGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .05 RPM
SRP007412_cerebellum 52 .77 RPM
SRP007412_heart 52 .29 RPM
SRP007412_kidney 97 .75 RPM
SRP007412_liver 100 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000014518 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000016008 ortholog_one2one 28 retrogenes
Callithrix jacchus ENSCJAG00000000723 ortholog_one2one 29 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2many 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 possible_ortholog 18 retrogenes
Equus caballus ENSECAG00000016489 ortholog_one2one 7 retrogenes
Erinaceus europaeus ENSEEUG00000004394 possible_ortholog 39 retrogenes
Felis catus ENSFCAG00000012284 ortholog_one2one 34 retrogenes
Homo sapiens ENSG00000163682 ortholog_one2one 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 ortholog_one2one 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000012021 possible_ortholog 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_many2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 ortholog_one2one 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 possible_ortholog 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2many 7 retrogenes
Nomascus leucogenys ENSNLEG00000017100 ortholog_one2one 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Procavia capensis ENSPCAG00000005834 possible_ortholog 22 retrogenes
Pteropus vampyrus ENSPVAG00000000919 possible_ortholog 49 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2many 8 retrogenes
Sus scrofa ENSSSCG00000025192 ortholog_one2one 15 retrogenes
Tupaia belangeri ENSTBEG00000006042 possible_ortholog 18 retrogenes
Tursiops truncatus ENSTTRG00000014289 possible_ortholog 13 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_162 98.44 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_pabe_1117 78.02 92.71
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_pabe_1157 70.89 81.77
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_pabe_1433 83.67 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_pabe_1521 74.19 63.54
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_pabe_1523 75.00 63.54
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_pabe_2148 82.56 89.06
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_pabe_2372 64.58 97.40
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_pabe_2695 64.29 57.81
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_pabe_3155 65.14 89.06
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSPPYG00000014675 retrocopies