RetrogeneDB ID: | retro_cjac_728 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 10:99744282..99744669(+) | ||
Located in intron of: | ENSCJAG00000020476 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSCJAG00000013392 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 86.05 % |
Parental protein coverage: | 70.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV |
L.TAGTEQFT.MRDLYMKNGQGFAL.YSITAQSTFN.LQDLREQIL.V.DTEDVPMI.VGNK.DLED..V | |
Retrocopy | LNTAGTEQFTVMRDLYMKNGQGFALSYSITAQSTFNNLQDLREQILLVRDTEDVPMIFVGNKRDLEDDCV |
Parental | VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL |
VGKE.GQNLAR.WCNCA.L.SSAKSK.NVNEIFYDLVRQINRKTP.EK..PKKKSCLLL | |
Retrocopy | VGKE*GQNLARRWCNCAILGSSAKSKMNVNEIFYDLVRQINRKTPMEKQQPKKKSCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .09 RPM | 16 .55 RPM |
SRP051959_heart | 0 .19 RPM | 21 .98 RPM |
SRP051959_kidney | 0 .09 RPM | 12 .38 RPM |
SRP051959_liver | 0 .15 RPM | 14 .66 RPM |
SRP051959_lung | 0 .54 RPM | 26 .00 RPM |
SRP051959_lymph_node | 0 .21 RPM | 32 .99 RPM |
SRP051959_skeletal_muscle | 0 .07 RPM | 15 .46 RPM |
SRP051959_spleen | 0 .63 RPM | 23 .61 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1364 |
Pan troglodytes | retro_ptro_937 |
Pongo abelii | retro_pabe_1132 |