RetrogeneDB ID: | retro_cjac_2218 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 3:26503773..26504214(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSCJAG00000013392 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 83.67 % |
Parental protein coverage: | 79.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYM |
EYKLVVL.SGG.GKSALTV.FVQGI...KYDP.IE.S.RKQV.VD.QQCMLEILDTAGTEQFTAMR.LYM | |
Retrocopy | EYKLVVLSSGGIGKSALTVPFVQGITFFKYDPMIEIS*RKQVAVD*QQCMLEILDTAGTEQFTAMRNLYM |
Parental | KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCA |
KNGQG..LVYSI.AQSTFNDLQD.REQIL.VK.TEDVP.IL.GNKCDLEDE.VVGKEQ.QNLARQWCNCA | |
Retrocopy | KNGQGLTLVYSIIAQSTFNDLQDPREQILWVKGTEDVPVILAGNKCDLEDE*VVGKEQRQNLARQWCNCA |
Parental | FLESSAK |
F.E.SAK | |
Retrocopy | FVETSAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 16 .55 RPM |
SRP051959_heart | 0 .00 RPM | 21 .98 RPM |
SRP051959_kidney | 0 .00 RPM | 12 .38 RPM |
SRP051959_liver | 0 .00 RPM | 14 .66 RPM |
SRP051959_lung | 0 .00 RPM | 26 .00 RPM |
SRP051959_lymph_node | 0 .00 RPM | 32 .99 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 15 .46 RPM |
SRP051959_spleen | 0 .00 RPM | 23 .61 RPM |