Parental gene: | ZCRB1, ENSCJAG00000017749 |
| Aliases: | None |
| Description: | zinc finger CCHC-type and RNA binding motif 1 [Source:HGNC Symbol;Acc:29620] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:29171456..29186883(+) |
>ENSCJAG00000017749
ATGAGTGGTGGATTGGCTCCAAGTAAGAGCACAGTGTATGTATCCAACTTGCCTTTTTCCCTGACAAACAATGACTTGTA
CCGGATATTTTCCAAGTATGGCAAAGTTGTAAAGGTTACCATAATGAAAGATAAAGATACCAGGAAGAGTAAAGGGGTTG
CATTTATTTTATTTTTGGATAAAGACTCTGCACAAAACTGTACCAGGGCAATAAACAACAAACAGTTATTTGGTAGAGTG
ATAAAAGCAAGCATTGCTATTGACAATGGAAGAGCAGCTGAGTTCATCCGAAGGCGAAACTACTTTGATAAATCTAAGTG
TTATGAATGTGGGGAAAGTGGACACTTAAGTTATGCCTGTCCAAAAAATATGCTTGGAGAACGTGAGCCGCCAAAGAAGA
AAGAAAAAAAGAAAAAAAAGAAAGCTCCTGAACCAGAAGAAGAAATTGAGGAAGTAGAAGAAAGTGAAGATGAAGGGGAG
GATCCTGCTCTTGACAGCCTCAGTCAGGCCATAGCATTCCAGCAAGCCAAAATTGAAGAAGAACAAAAAAAATGGAAACC
CAGTTCAGGAGGCCCCTCAACGTCAGATGATTCAAGACGCCCAAGGATAAAGAAAAGCACATATTTCAGTGATGAGGAAG
AACTTAGTGATTAA
ATGAGTGGTGGATTGGCTCCAAGTAAGAGCACAGTGTATGTATCCAACTTGCCTTTTTCCCTGACAAACAATGACTTGTA
CCGGATATTTTCCAAGTATGGCAAAGTTGTAAAGGTTACCATAATGAAAGATAAAGATACCAGGAAGAGTAAAGGGGTTG
CATTTATTTTATTTTTGGATAAAGACTCTGCACAAAACTGTACCAGGGCAATAAACAACAAACAGTTATTTGGTAGAGTG
ATAAAAGCAAGCATTGCTATTGACAATGGAAGAGCAGCTGAGTTCATCCGAAGGCGAAACTACTTTGATAAATCTAAGTG
TTATGAATGTGGGGAAAGTGGACACTTAAGTTATGCCTGTCCAAAAAATATGCTTGGAGAACGTGAGCCGCCAAAGAAGA
AAGAAAAAAAGAAAAAAAAGAAAGCTCCTGAACCAGAAGAAGAAATTGAGGAAGTAGAAGAAAGTGAAGATGAAGGGGAG
GATCCTGCTCTTGACAGCCTCAGTCAGGCCATAGCATTCCAGCAAGCCAAAATTGAAGAAGAACAAAAAAAATGGAAACC
CAGTTCAGGAGGCCCCTCAACGTCAGATGATTCAAGACGCCCAAGGATAAAGAAAAGCACATATTTCAGTGATGAGGAAG
AACTTAGTGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 12 .96 RPM |
| SRP051959_skeletal_muscle | 13 .04 RPM |
| SRP051959_lymph_node | 13 .06 RPM |
| SRP051959_lung | 11 .91 RPM |
| SRP051959_liver | 11 .00 RPM |
| SRP051959_kidney | 13 .71 RPM |
| SRP051959_heart | 12 .40 RPM |
| SRP051959_colon | 5 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000019119 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000004490 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000014554 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010107 | ortholog_one2one | 11 retrogenes | |
| Equus caballus | ENSECAG00000012174 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000000397 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000019302 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015647 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000008847 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000017422 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000001332 | ortholog_one2many | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000008893 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000022635 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000013664 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000013178 | ortholog_one2many | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000011095 | ortholog_one2one | 2 retrogenes | |
| Procavia capensis | ENSPCAG00000011749 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000004838 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000006651 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2009 | 62.43 | 85.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2662 | 80.91 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_4174 | 69.12 | 61.29 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000017749 retrocopies