RetrogeneDB ID: | retro_dnov_1120 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_150245:6614..7244(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCRB1 | ||
Ensembl ID: | ENSDNOG00000010107 | ||
Aliases: | None | ||
Description: | zinc finger CCHC-type and RNA binding motif 1 [Source:HGNC Symbol;Acc:29620] |
Percent Identity: | 80.48 % |
Parental protein coverage: | 96.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCTRA |
M.GGLAPSKS.VYVSN.PFS.TNNDLYRIFSK.GKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCTRA | |
Retrocopy | MCGGLAPSKSIVYVSNFPFSPTNNDLYRIFSKFGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCTRA |
Parental | INNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECG-SGHLSYACPKNMLGGREPPKKKEKKEKK |
INNKQLFGRVIKASIA.DNGRAAEFIRRRNYFDKSKCYECG.SGHLSYACPKNMLG.REP.......... | |
Retrocopy | INNKQLFGRVIKASIATDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGAREPXXXXXXXXXX |
Parental | KIPEPEEEIEEVEESEDEGEDPALDSLGQAIAFQQAK-TEEHKRWKPSSGDPSTSDDSRRPRIKKSTYFS |
.........EEVEESEDEGEDPALDSLGQA.AFQQAK..EE.KRWKPSSGD.STS..SR.P..K....FS | |
Retrocopy | XXXXXXXXXEEVEESEDEGEDPALDSLGQATAFQQAKIEEEQKRWKPSSGDSSTSE*SRPPKVKVKPQFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 9 .14 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .57 RPM |
SRP012922_heart | 0 .00 RPM | 9 .75 RPM |
SRP012922_kidney | 0 .00 RPM | 12 .59 RPM |
SRP012922_liver | 0 .00 RPM | 5 .26 RPM |
SRP012922_lung | 0 .00 RPM | 14 .51 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 12 .81 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .39 RPM |