RetrogeneDB ID:

retro_ogar_43

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873527.1:34765914..34766565(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000026881
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000013178
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_43
ATGAGTGGTGGATTGGCTTCAAGTAAGAGCACAGTATATGTATCCAACTTGCCCTTTTCCCTGACAAACAATGACTTATA
CAGGATATTTTCCAAGTACGGCAAAGTTGTAAAGGTTACTATAATGAAAGATAAAGATACGAGGAAGAGTAAAGGAGTTG
CATTTATTTTATTTTTGGATAAAGACTCTGCACAAAACTGTACGAGGGCAATAAACAACACACAGTTATTTGGTCGAAAG
ATGAAAGCAAGCATTGCTATTGACAATGGAAGAGCCGCTGAGTTCATCCAAAGGCGAAACTACTTTGATAAATCTAAGTG
TTACGAATGTGGGGAAAGTGGACATTTAAGTTATGCCTGTCCTAAAAATATGCTTGGAGAACGTGAACCTCCAAAGAAGA
AAGAAAAAAAGAAAAAAAAGAAAATTCCTGAACCAGAGAAAGAGATTGCAGAAGTAGGAGAAAGTGAAGATGAAGAGGAA
GATCCCGCTCTGGACAGCCTCAGTCAGGCCATCGCATCCCTGCAAGCCAAAATTGAAGAAGAACAAAGAAAATGGAAACC
CAGTTCTGGGGTCCCCTCAACATCAGATGATTCAGGACGCCCAAGGATAAAGAAAAGCAACTACTTCAGTGATGAGGAAG
AACTGAGTGAT

ORF - retro_ogar_43 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.93 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA
MSGGLA.SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA
RetrocopyMSGGLASSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA
ParentalINNKQLFGRMIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGEREPPKKKEKKKKK
INN.QLFGR..KASIAIDNGRAAEFI.RRNYFDKSKCYECGESGHLSYACPKNMLGEREPPKKKEKKKKK
RetrocopyINNTQLFGRKMKASIAIDNGRAAEFIQRRNYFDKSKCYECGESGHLSYACPKNMLGEREPPKKKEKKKKK
ParentalKIPEPEEEIAEVGESEDEGEDPALDSLSQAIAFQQAKIEEEQRKWKPSSGGPSTSDDSRRPRIKKSNYFS
KIPEPE.EIAEVGESEDE.EDPALDSLSQAIA..QAKIEEEQRKWKPSSG.PSTSDDS.RPRIKKSNYFS
RetrocopyKIPEPEKEIAEVGESEDEEEDPALDSLSQAIASLQAKIEEEQRKWKPSSGVPSTSDDSGRPRIKKSNYFS
ParentalDEEELSD
DEEELSD
RetrocopyDEEELSD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_43 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 43 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000191192 retrocopies
Choloepus hoffmanni ENSCHOG000000044901 retrocopy
Callithrix jacchus ENSCJAG000000177493 retrocopies
Cavia porcellus ENSCPOG000000145541 retrocopy
Dasypus novemcinctus ENSDNOG0000001010711 retrocopies
Equus caballus ENSECAG000000121741 retrocopy
Erinaceus europaeus ENSEEUG000000003971 retrocopy
Echinops telfairi ENSETEG000000193021 retrocopy
Gorilla gorilla ENSGGOG000000156471 retrocopy
Loxodonta africana ENSLAFG000000088472 retrocopies
Microcebus murinus ENSMICG000000174223 retrocopies
Myotis lucifugus ENSMLUG000000013323 retrocopies
Monodelphis domestica ENSMODG000000088931 retrocopy
Mus musculus ENSMUSG000000226351 retrocopy
Oryctolagus cuniculus ENSOCUG000000136642 retrocopies
Otolemur garnettii ENSOGAG00000013178 2 retrocopies
retro_ogar_43 , retro_ogar_812,
Ochotona princeps ENSOPRG000000110952 retrocopies
Procavia capensis ENSPCAG000000117492 retrocopies
Pan troglodytes ENSPTRG000000048381 retrocopy
Pteropus vampyrus ENSPVAG000000066512 retrocopies



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