RetrogeneDB ID: | retro_dnov_1075 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_143911:4322..4779(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCRB1 | ||
Ensembl ID: | ENSDNOG00000010107 | ||
Aliases: | None | ||
Description: | zinc finger CCHC-type and RNA binding motif 1 [Source:HGNC Symbol;Acc:29620] |
Percent Identity: | 51.27 % |
Parental protein coverage: | 71.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTI-MKDKDTRKSKG-VAFILFLDK-ESAQNC |
MS.GL.P.K.....SNL..SLTN..L...FSK..KVV.V...MK...T.KSKG.V..I.FL...ESAQNC | |
Retrocopy | MSAGLVPGKRVACISNLS-SLTNTTLSWMFSKCVKVVEVIV<MKESSTEKSKG<VGLIFFLNR<ESAQNC |
Parental | TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYEC-GSGHLSYACPKNMLGGREPPKKKEKK |
TR..NNK.LFGRVIK..I.IDN..AAEFI.R.NY.DKS...EC..SGH..Y.CP.N...G.E........ | |
Retrocopy | TRPLNNKWLFGRVIKGTITIDN*KAAEFISR*NYSDKSRSKECQESGHPGYTCPENVHEGYEQRESENPR |
Parental | EKKK-IPEPEEEIEEVEE |
.......E.EE...E.E. | |
Retrocopy | TRRR>SEELEENEDEGED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 9 .14 RPM |
SRP012922_cerebellum | 0 .27 RPM | 14 .57 RPM |
SRP012922_heart | 0 .00 RPM | 9 .75 RPM |
SRP012922_kidney | 0 .00 RPM | 12 .59 RPM |
SRP012922_liver | 0 .00 RPM | 5 .26 RPM |
SRP012922_lung | 0 .00 RPM | 14 .51 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 12 .81 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .39 RPM |