RetrogeneDB ID: | retro_mmus_847 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:14929896..14930538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Zcrb1 | ||
Ensembl ID: | ENSMUSG00000022635 | ||
Aliases: | Zcrb1, 2700088M22Rik, Madp-1 | ||
Description: | zinc finger CCHC-type and RNA binding motif 1 [Source:MGI Symbol;Acc:MGI:1914447] |
Percent Identity: | 89.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKG-VAFI-LFLDKDSALNCT |
MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMK.KDTRKS.G.V.FI.LFLDKDSALNCT | |
Retrocopy | MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKGKDTRKSNG<VVFI<LFLDKDSALNCT |
Parental | RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYF-DKSKCYECGESGHLSYACPKNMLGEREPPKKKEKK |
RAINNKQLFGRVIKASIAIDNGRA.EFI.RR....DKSKCYECGESG.LSYACPK.MLGE.EPPK.KEKK | |
Retrocopy | RAINNKQLFGRVIKASIAIDNGRAPEFI-RRRNW<DKSKCYECGESGRLSYACPKSMLGECEPPKMKEKK |
Parental | KKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEEEQSKWRPNPGGPSTSDDSRRPRIKKSA |
K.RK.PEPEEEIEEVEVSEE.G.DPALDSLSQAIAFQQAKIEE.QSKWRPNPG.PSTSD.SR.PRIKKSA | |
Retrocopy | K-RKVPEPEEEIEEVEVSEEKGDDPALDSLSQAIAFQQAKIEERQSKWRPNPGEPSTSDYSRQPRIKKSA |
Parental | YFSDEEELSD |
.FSDEEELSD | |
Retrocopy | FFSDEEELSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 31 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .18 RPM |
SRP007412_heart | 0 .03 RPM | 32 .97 RPM |
SRP007412_kidney | 0 .08 RPM | 25 .87 RPM |
SRP007412_liver | 0 .03 RPM | 15 .76 RPM |
SRP007412_testis | 0 .05 RPM | 27 .35 RPM |