RetrogeneDB ID: | retro_mdom_114 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:444143882..444144536(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000006493 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000008893 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.56 % |
Parental protein coverage: | 86.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RVTIMKDKDTRKSKGVAFILFLDKESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSRC |
.VTIMKDKDTRKSKGVAFILFLDKESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKS.C | |
Retrocopy | KVTIMKDKDTRKSKGVAFILFLDKESAQNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSQC |
Parental | YECGETGHLSYACPKNVLGEREPPKKKEKKKRKKIIELEEEIEEVEESEDEGEDPALDSLSQAIAFQQAK |
YECGETGHLSYACPKNVLGER.PPKKKEKKKRKKII.LEEEIEEV..SE.EGEDPALDSLSQAIAFQQAK | |
Retrocopy | YECGETGHLSYACPKNVLGERDPPKKKEKKKRKKIIKLEEEIEEVDKSEGEGEDPALDSLSQAIAFQQAK |
Parental | IEEDQQRWKPSASEPSTSDDSRRPRIKKSAYFSDEEELSD |
IEEDQQRWKP.ASEPSTSDDSRRPRIKKSAYFSDEEELSD | |
Retrocopy | IEEDQQRWKPCASEPSTSDDSRRPRIKKSAYFSDEEELSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |