RetrogeneDB ID:

retro_mmur_466

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_3292:194001..194335(-)
Located in intron of:ENSMICG00000008797
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ZCRB1
Ensembl ID:ENSMICG00000017422
Aliases:None
Description:zinc finger CCHC-type and RNA binding motif 1 [Source:HGNC Symbol;Acc:29620]


Retrocopy-Parental alignment summary:






>retro_mmur_466
TTTGGTCAAGTAACAAAAGCAAGCATTGCTATTGGCTGCTAAAGAGCAGCTCAATTCATTTGAAGGTAAAACTCCTTTGA
TGAGTCTAGGTCTAGTGAATGTAGGGGAAATGGATACTTAAGTTATATGAGTCTTGAAAATATGCATGGAGAATGTAAAC
CACTGCAAAAGGTAGACAAAAAGAGAAGAGAGAAAATCCCAGGTCCTGGAGAAGAAAGTGAGGAAGTAGAAGAAAGTGAA
GATGAAGGAGAGGATCCTGCATTTGGTAGCCCAGCCCGGCTGTAGCTTTCCAGCAGCTGATCATGAAGAAGAACAAAGGT
GGGAATATGAGTCT

ORF - retro_mmur_466 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.26 %
Parental protein coverage: 52.07 %
Number of stop codons detected: 3
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGEREPPKKKEKKKKKKIPEPE
FG.V.KASIAI...RAA.FI.R.N.FD.S...EC...G.LSY....NM.GE..P..K..KK...KIP.P.
RetrocopyFGQVTKASIAIGC*RAAQFI*R*NSFDESRSSECRGNGYLSYMSLENMHGECKPLQKVDKKRREKIPGPG
ParentalEEIEEVEESEDEGEDPALDS-LSQAIAFQQ-AKIEEEQKKWKHSS
EE.EEVEESEDEGEDPA..S..S.A.AFQQ.A..EEEQ..W...S
RetrocopyEESEEVEESEDEGEDPAFGS<PSPAVAFQQ<ADHEEEQ-RWEYES

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_466 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_466 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 43 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000191192 retrocopies
Choloepus hoffmanni ENSCHOG000000044901 retrocopy
Callithrix jacchus ENSCJAG000000177493 retrocopies
Cavia porcellus ENSCPOG000000145541 retrocopy
Dasypus novemcinctus ENSDNOG0000001010711 retrocopies
Equus caballus ENSECAG000000121741 retrocopy
Erinaceus europaeus ENSEEUG000000003971 retrocopy
Echinops telfairi ENSETEG000000193021 retrocopy
Gorilla gorilla ENSGGOG000000156471 retrocopy
Loxodonta africana ENSLAFG000000088472 retrocopies
Microcebus murinus ENSMICG00000017422 3 retrocopies
retro_mmur_1236, retro_mmur_236, retro_mmur_466 ,
Myotis lucifugus ENSMLUG000000013323 retrocopies
Monodelphis domestica ENSMODG000000088931 retrocopy
Mus musculus ENSMUSG000000226351 retrocopy
Oryctolagus cuniculus ENSOCUG000000136642 retrocopies
Otolemur garnettii ENSOGAG000000131782 retrocopies
Ochotona princeps ENSOPRG000000110952 retrocopies
Procavia capensis ENSPCAG000000117492 retrocopies
Pan troglodytes ENSPTRG000000048381 retrocopy
Pteropus vampyrus ENSPVAG000000066512 retrocopies



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