RetrogeneDB ID: | retro_pcap_458 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_97360:4536..5021(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCRB1 | ||
Ensembl ID: | ENSPCAG00000011749 | ||
Aliases: | None | ||
Description: | zinc finger CCHC-type and RNA binding motif 1 [Source:HGNC Symbol;Acc:29620] |
Percent Identity: | 59.39 % |
Parental protein coverage: | 74.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVXXTIMKDKDTRKSKGVAFILF-LDKESAQNCTR |
MSGGL.PSK.T....N.PFSLT..DL..IFSKYGKVV..T.MKDK.TRKSK.VAFILF.LDKESA..C.R | |
Retrocopy | MSGGLVPSKNTGCIHNWPFSLTSSDL*QIFSKYGKVVKVTVMKDKETRKSKEVAFILF<LDKESA*YCNR |
Parental | GINNKQLFGRMIKASIAIDNGRAAEFIRRRHYFDKSKCYECGESGHLSYACPK-NMLGEREPPKKKEKKK |
.I.NK.LFGR.IKASI.ID...A..FI.R.HYFDK..C.EC...GHLSY..PK.NMLGE..PP.K..KK. | |
Retrocopy | AITNKWLFGRVIKASIGIDKEGASGFIQRQHYFDKANCFECRGNGHLSYVRPK<NMLGEHKPPNKEKKKS |
Parental | -KKKISEPEEQIEEIEESDDEGEDP |
.........E..E...E..D....P | |
Retrocopy | >SQPEKQLKELEESDNEGEDPVDGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |