RetrogeneDB ID: | retro_pcap_64 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_3642:47187..47572(-) | ||
Located in intron of: | ENSPCAG00000008091 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCRB1 | ||
Ensembl ID: | ENSPCAG00000011749 | ||
Aliases: | None | ||
Description: | zinc finger CCHC-type and RNA binding motif 1 [Source:HGNC Symbol;Acc:29620] |
Percent Identity: | 56.49 % |
Parental protein coverage: | 59.45 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MSGGLAPSKSTVYVSNLP-FSLTNNDLYRIFSKYGKVVXXTIMKDKDTRKSKGVAFILFLDKESAQ-NCT |
..GG..P.KST..VS..P..SLT.NDL.....KY.K.V..TIMKDKDTRK.K.V...LFLD.E.AQ..CT | |
Retrocopy | LHGGSVPRKSTM*VSSPP<YSLTYNDL*PDIFKYDKFVKVTIMKDKDTRKRKWVV*GLFLDEEWAQ<SCT |
Parental | RGINNKQLFGRMIKASIAIDNGRAAEFIRRRHYFDKSKCYECGESGHLSYACPKNMLGERE |
R.IN.KQ..GR..KA.IA.DNGR.AEF...R...D...CYE..E.G.L.YAC.KNM..E.E | |
Retrocopy | REINKKQFCGRVTKAGIATDNGRMAEFT*WRQKSDEPQCYERVENGCLTYACSKNMFREQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |