Parental gene:

ENSECAG00000019180

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:2:32549078..32564145(-)


>ENSECAG00000019180
ATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCCGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAATAA
GTTTCCATCTGAGTATGTACCAACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATATACTCTTG
GACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACAAACAGATGTGTTTCTAGTC
TGTTTTTCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAA
GACTCCTTTCTTGCTTGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAAC
AGAAGCCCATCACTCCAGAGACTGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTC
ACACAGAGAGGTCTGAAGAATGTGTTTGATGAGGCTATCCTAGCTGCCCTCGAGCCTCCGGAAACTCAACCCAAAAGGAA
GTGCTGTATATTCTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 6 .56 RPM
SRP021940_embryo 10 .56 RPM
SRP021940_cerebellum 11 .68 RPM
SRP021940_testis 2 .94 RPM
SRP021940_placental_villous 13 .71 RPM
SRP021940_articular_cartilage 4 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014707 possible_ortholog 5 retrogenes
retro_cfam_1587, retro_cfam_1970, retro_cfam_2189, retro_cfam_88, retro_cfam_89,
Choloepus hoffmanni ENSCHOG00000005306 possible_ortholog 10 retrogenes
retro_chof_103, retro_chof_1044, retro_chof_1195, retro_chof_1853, retro_chof_2055, retro_chof_2105, retro_chof_2331, retro_chof_2407, retro_chof_50, retro_chof_800,
Callithrix jacchus ENSCJAG00000005912 possible_ortholog 6 retrogenes
retro_cjac_1275, retro_cjac_1808, retro_cjac_1826, retro_cjac_2251, retro_cjac_751, retro_cjac_911,
Cavia porcellus ENSCPOG00000006543 possible_ortholog 4 retrogenes
retro_cpor_1168, retro_cpor_286, retro_cpor_33, retro_cpor_887,
Dipodomys ordii ENSDORG00000010374 ortholog_one2one 3 retrogenes
retro_dord_17, retro_dord_464, retro_dord_552,
Equus caballus ENSECAG00000022570 other_paralog 2 retrogenes
retro_ecab_619, retro_ecab_705,
Echinops telfairi ENSETEG00000004443 possible_ortholog 1 retrogene
retro_etel_2010,
Felis catus ENSFCAG00000004853 possible_ortholog 4 retrogenes
retro_fcat_129, retro_fcat_1421, retro_fcat_1579, retro_fcat_896,
Homo sapiens ENSG00000070831 possible_ortholog 6 retrogenes
retro_hsap_2775, retro_hsap_2968, retro_hsap_3028, retro_hsap_3404, retro_hsap_3848, retro_hsap_4013,
Gorilla gorilla ENSGGOG00000024439 possible_ortholog 5 retrogenes
retro_ggor_1932, retro_ggor_2057, retro_ggor_2303, retro_ggor_2593, retro_ggor_2695,
Myotis lucifugus ENSMLUG00000013365 possible_ortholog 4 retrogenes
retro_mluc_1076, retro_mluc_1864, retro_mluc_2456, retro_mluc_905,
Macaca mulatta ENSMMUG00000022009 possible_ortholog 8 retrogenes
retro_mmul_1449, retro_mmul_1612, retro_mmul_1685, retro_mmul_1900, retro_mmul_1932, retro_mmul_24, retro_mmul_349, retro_mmul_598,
Monodelphis domestica ENSMODG00000016078 possible_ortholog 3 retrogenes
retro_mdom_18, retro_mdom_181, retro_mdom_537,
Mus musculus ENSMUSG00000006699 possible_ortholog 3 retrogenes
retro_mmus_2816, retro_mmus_2995, retro_mmus_3170,
Oryctolagus cuniculus ENSOCUG00000009986 possible_ortholog 1 retrogene
retro_ocun_60,
Otolemur garnettii ENSOGAG00000014261 ortholog_one2one 1 retrogene
retro_ogar_131,
Ochotona princeps ENSOPRG00000005331 possible_ortholog 2 retrogenes
retro_opri_868, retro_opri_995,
Pongo abelii ENSPPYG00000001755 possible_ortholog 6 retrogenes
retro_pabe_2240, retro_pabe_2461, retro_pabe_2801, retro_pabe_3215, retro_pabe_3239, retro_pabe_3295,
Rattus norvegicus ENSRNOG00000013536 possible_ortholog 1 retrogene
retro_rnor_2062,
Sorex araneus ENSSARG00000005184 possible_ortholog 3 retrogenes
retro_sara_10, retro_sara_220, retro_sara_3,
Sus scrofa ENSSSCG00000003520 possible_ortholog 1 retrogene
retro_sscr_899,
Ictidomys tridecemlineatus ENSSTOG00000000805 possible_ortholog 4 retrogenes
retro_itri_1158, retro_itri_1602, retro_itri_1615, retro_itri_431,
Tupaia belangeri ENSTBEG00000002614 possible_ortholog 17 retrogenes
retro_tbel_1091, retro_tbel_1379, retro_tbel_1697, retro_tbel_1711, retro_tbel_183, retro_tbel_2320, retro_tbel_2447, retro_tbel_2721, retro_tbel_4016, retro_tbel_4168, retro_tbel_4184, retro_tbel_4273, retro_tbel_4427, retro_tbel_584, retro_tbel_585, retro_tbel_860, retro_tbel_873,
Tarsius syrichta ENSTSYG00000000679 ortholog_one2one 11 retrogenes
retro_tsyr_1575, retro_tsyr_1597, retro_tsyr_1854, retro_tsyr_1976, retro_tsyr_2048, retro_tsyr_2098, retro_tsyr_352, retro_tsyr_387, retro_tsyr_539, retro_tsyr_66, retro_tsyr_963,
Tursiops truncatus ENSTTRG00000005708 ortholog_one2one 2 retrogenes
retro_ttru_118, retro_ttru_54,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_11 96.81 98.43
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Download FASTA sequences of all ENSECAG00000019180 retrocopies