RetrogeneDB ID: | retro_ecab_11 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:179931647..179932223(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000004908 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000019180 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.81 % |
Parental protein coverage: | 98.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL | |
Retrocopy | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SYPQTDVFLVCFSVVS.SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE | |
Retrocopy | SYPQTDVFLVCFSVVSQSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
Parental | TAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPPETQPKRKC |
TAEKLARDLKAVKYVECSALTQ.GLKNVFDEAILAALEPPE..PK..C | |
Retrocopy | TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE--PKKSC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .47 RPM | 4 .07 RPM |
SRP021940_cerebellum | 1 .09 RPM | 11 .68 RPM |
SRP021940_embryo | 3 .04 RPM | 10 .56 RPM |
SRP021940_placental_villous | 3 .22 RPM | 13 .71 RPM |
SRP021940_synovial_membrane | 2 .14 RPM | 6 .56 RPM |
SRP021940_testis | 0 .77 RPM | 2 .94 RPM |