Parental gene:

RPL23A, ENSG00000198242

Aliases:None
Description:ribosomal protein L23a [Source:HGNC Symbol;Acc:10317]
Organism:Human (Homo sapiens)
Coordinates:17:27046410..27051377(+)


>ENSG00000198242
ATGGCGCCGAAAGCGAAGAAGGAAGCTCCTGCCCCTCCTAAAGCTGAAGCCAAAGCGAAGGCTTTAAAGGCCAAGAAGGC
AGTGTTGAAAGGTGTCCACAGCCACAAAAAGAAGAAGATCCGCACGTCACCCACCTTCCGGCGGCCGAAGACACTGCGAC
TCCGGAGACAGCCCAAATATCCTCGGAAGAGCGCTCCCAGGAGAAACAAGCTTGACCACTATGCTATCATCAAGTTTCCG
CTGACCACTGAGTCTGCCATGAAGAAGATAGAAGACAACAACACACTTGTGTTCATTGTGGATGTTAAAGCCAACAAGCA
CCAGATTAAACAGGCTGTGAAGAAGCTGTATGACATTGATGTGGCCAAGGTCAACACCCTGATTCGGCCTGATGGAGAGA
AGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTAA

Library Parental gene expression (RPM)
bodymap2_liver 67 .28 RPM
bodymap2_lung 194 .32 RPM
bodymap2_breast 119 .40 RPM
bodymap2_adipose 192 .56 RPM
bodymap2_adrenal 242 .36 RPM
bodymap2_skeletal_muscle 185 .41 RPM
bodymap2_thyroid 127 .58 RPM
bodymap2_prostate 296 .99 RPM
bodymap2_colon 221 .12 RPM
bodymap2_testis 126 .20 RPM
bodymap2_brain 43 .88 RPM
bodymap2_heart 56 .34 RPM
bodymap2_white_blood_cells 333 .55 RPM
bodymap2_lymph_node 239 .11 RPM
bodymap2_ovary 286 .76 RPM
bodymap2_kidney 85 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
retro_btau_132, retro_btau_159, retro_btau_169, retro_btau_178, retro_btau_237, retro_btau_8,
Callithrix jacchus ENSCJAG00000013126 ortholog_one2one 7 retrogenes
retro_cjac_118, retro_cjac_154, retro_cjac_20, retro_cjac_258, retro_cjac_30, retro_cjac_315, retro_cjac_46,
Felis catus ENSFCAG00000004021 ortholog_one2one 35 retrogenes
retro_fcat_1003, retro_fcat_1011, retro_fcat_1030, retro_fcat_1039, retro_fcat_1054, retro_fcat_1071, retro_fcat_1073, retro_fcat_11, retro_fcat_1124, retro_fcat_1161, retro_fcat_1202, retro_fcat_1205, retro_fcat_1275, retro_fcat_1389, retro_fcat_1659, retro_fcat_1670, retro_fcat_1748, retro_fcat_1787, retro_fcat_1796, retro_fcat_1810, retro_fcat_182, retro_fcat_185, retro_fcat_1856, retro_fcat_1905, retro_fcat_1909, retro_fcat_1944, retro_fcat_2022, retro_fcat_289, retro_fcat_364, retro_fcat_476, retro_fcat_603, retro_fcat_657, retro_fcat_765, retro_fcat_898, retro_fcat_950,
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
retro_ggor_1027, retro_ggor_1028, retro_ggor_1123, retro_ggor_120, retro_ggor_123, retro_ggor_1284, retro_ggor_140, retro_ggor_1431, retro_ggor_158, retro_ggor_1650, retro_ggor_1743, retro_ggor_1789, retro_ggor_1911, retro_ggor_1948, retro_ggor_2164, retro_ggor_2239, retro_ggor_2285, retro_ggor_229, retro_ggor_2409, retro_ggor_2475, retro_ggor_2568, retro_ggor_2764, retro_ggor_2773, retro_ggor_580, retro_ggor_611, retro_ggor_642,
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
retro_lafr_1176, retro_lafr_153, retro_lafr_237, retro_lafr_33, retro_lafr_335, retro_lafr_442, retro_lafr_510, retro_lafr_525, retro_lafr_551, retro_lafr_557, retro_lafr_643, retro_lafr_78, retro_lafr_891, retro_lafr_908, retro_lafr_957, retro_lafr_96,
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
retro_mluc_175, retro_mluc_2375, retro_mluc_353, retro_mluc_91,
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
retro_mdom_120, retro_mdom_870, retro_mdom_912,
Mustela putorius furo ENSMPUG00000014179 ortholog_one2many 12 retrogenes
retro_mputfur_102, retro_mputfur_106, retro_mputfur_123, retro_mputfur_159, retro_mputfur_168, retro_mputfur_179, retro_mputfur_3, retro_mputfur_333, retro_mputfur_42, retro_mputfur_52, retro_mputfur_599, retro_mputfur_91,
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
retro_mmus_1, retro_mmus_126, retro_mmus_130, retro_mmus_184, retro_mmus_224, retro_mmus_64, retro_mmus_84, retro_mmus_95,
Pongo abelii ENSPPYG00000008108 ortholog_one2one 49 retrogenes
retro_pabe_1030, retro_pabe_1203, retro_pabe_1206, retro_pabe_1335, retro_pabe_1430, retro_pabe_1459, retro_pabe_1590, retro_pabe_1721, retro_pabe_1747, retro_pabe_1752, retro_pabe_1766, retro_pabe_1797, retro_pabe_1846, retro_pabe_1848, retro_pabe_1867, retro_pabe_1926, retro_pabe_1947, retro_pabe_1995, retro_pabe_2018, retro_pabe_2057, retro_pabe_2075, retro_pabe_2082, retro_pabe_2091, retro_pabe_2132, retro_pabe_2156, retro_pabe_2221, retro_pabe_2334, retro_pabe_234, retro_pabe_243, retro_pabe_2612, retro_pabe_2738, retro_pabe_2773, retro_pabe_2820, retro_pabe_2944, retro_pabe_3006, retro_pabe_3036, retro_pabe_3200, retro_pabe_3371, retro_pabe_3477, retro_pabe_351, retro_pabe_3528, retro_pabe_354, retro_pabe_474, retro_pabe_627, retro_pabe_754, retro_pabe_765, retro_pabe_799, retro_pabe_946, retro_pabe_984,
Rattus norvegicus ENSRNOG00000023344 ortholog_one2one 6 retrogenes
retro_rnor_136, retro_rnor_145, retro_rnor_211, retro_rnor_40, retro_rnor_404, retro_rnor_62,
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
retro_shar_188, retro_shar_373, retro_shar_407, retro_shar_448, retro_shar_498, retro_shar_564, retro_shar_624, retro_shar_630, retro_shar_685, retro_shar_698, retro_shar_824, retro_shar_829, retro_shar_835,
Sus scrofa ENSSSCG00000017768 possible_ortholog 9 retrogenes
retro_sscr_1025, retro_sscr_1047, retro_sscr_1133, retro_sscr_239, retro_sscr_356, retro_sscr_418, retro_sscr_598, retro_sscr_638, retro_sscr_952,
Ictidomys tridecemlineatus ENSSTOG00000011328 ortholog_one2one 23 retrogenes
retro_itri_1022, retro_itri_1035, retro_itri_1051, retro_itri_1059, retro_itri_1071, retro_itri_1150, retro_itri_1261, retro_itri_1327, retro_itri_1347, retro_itri_1460, retro_itri_1507, retro_itri_217, retro_itri_225, retro_itri_304, retro_itri_360, retro_itri_494, retro_itri_626, retro_itri_627, retro_itri_734, retro_itri_761, retro_itri_791, retro_itri_965, retro_itri_972,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_110 76.28 98.08
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2. retro_hsap_334 67.30 100.00
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3. retro_hsap_341 76.92 98.72
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4. retro_hsap_342 79.35 98.08
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5. retro_hsap_345 86.00 64.10
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6. retro_hsap_490 68.55 100.00
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7. retro_hsap_504 92.95 100.00
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8. retro_hsap_641 77.36 99.36
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9. retro_hsap_672 87.34 100.00
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10. retro_hsap_725 88.46 98.72
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11. retro_hsap_751 92.31 100.00
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12. retro_hsap_775 89.10 100.00
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13. retro_hsap_945 83.44 100.00
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14. retro_hsap_1139 67.97 96.79
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15. retro_hsap_1177 77.18 94.87
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16. retro_hsap_1315 83.66 96.15
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17. retro_hsap_1316 83.33 100.00
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18. retro_hsap_1460 84.81 100.00
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19. retro_hsap_1616 83.33 100.00
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20. retro_hsap_1660 77.97 74.05
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21. retro_hsap_1714 80.12 100.00
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22. retro_hsap_1775 96.15 100.00
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23. retro_hsap_1791 75.00 98.72
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24. retro_hsap_1807 51.82 68.35
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25. retro_hsap_1833 85.71 92.41
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26. retro_hsap_1924 86.71 100.00
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27. retro_hsap_1970 96.15 100.00
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28. retro_hsap_2021 76.77 98.08
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29. retro_hsap_2024 71.97 100.00
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30. retro_hsap_2134 64.71 56.57
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31. retro_hsap_2169 69.75 67.43
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32. retro_hsap_2210 73.55 98.72
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33. retro_hsap_2222 81.05 97.44
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34. retro_hsap_2271 89.17 100.00
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35. retro_hsap_2310 74.36 98.72
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36. retro_hsap_2356 65.52 89.87
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37. retro_hsap_2359 69.83 57.73
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38. retro_hsap_2390 76.43 100.00
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39. retro_hsap_2404 77.36 99.36
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40. retro_hsap_2446 73.29 100.00
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41. retro_hsap_2509 87.58 98.08
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42. retro_hsap_2511 79.35 98.08
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43. retro_hsap_2528 78.85 100.00
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44. retro_hsap_2567 75.00 98.72
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45. retro_hsap_2602 67.55 94.23
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46. retro_hsap_2629 89.74 100.00
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47. retro_hsap_2748 84.08 100.00
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48. retro_hsap_2804 85.44 100.00
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49. retro_hsap_2874 99.36 100.00
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50. retro_hsap_3282 77.36 99.36
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51. retro_hsap_3377 77.36 100.00
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52. retro_hsap_3545 76.28 98.08
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53. retro_hsap_3571 81.53 99.36
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54. retro_hsap_3815 86.24 63.53
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55. retro_hsap_4118 57.96 98.72
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56. retro_hsap_4127 90.51 100.00
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57. retro_hsap_4329 85.44 100.00
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Download FASTA sequences of all ENSG00000198242 retrocopies