Parental gene:

RPL23A, ENSCJAG00000013126

Aliases:None
Description:ribosomal protein L23a [Source:HGNC Symbol;Acc:10317]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:95373022..95378365(-)


>ENSCJAG00000013126
ATGGCGCCGAAAGCGAAGAAGGAAGCTCCTGCCCCTCCTAAAGCCGAAGCCAAAGCGAAGGCTTTAAAGGCCAAGAAGGC
AGTGTTGAAAGGTGTCCACAGCCACAAAAAAAAGAAGATCCGCACGTCACCCACCTTCCGGCGGCCCAAGACACTGCGAC
TCCGAAGGCAGCCCAAATATCCTCGGAAGAGCGCCCCCAGGAGAAACAAACTTGACCACTATGCGATCATCAAGTTTCCA
CTGACCACTGAGTCTGCCATGAAGAAGATAGAAGACAACAACACACTTGTGTTCATTGTGGATGTTAAAGCCAACAAGCA
CCAGATCAAACAGGCTGTGAAGAAGCTCTATGACATTGATGTGGCCAAGGTCAACACCCTGATTCGGCCTGATGGAGAGA
AGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGATGTTGCAAACAAAATTGGGATCATCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 184 .29 RPM
SRP051959_skeletal_muscle 108 .73 RPM
SRP051959_lymph_node 242 .34 RPM
SRP051959_lung 140 .32 RPM
SRP051959_liver 159 .53 RPM
SRP051959_kidney 140 .33 RPM
SRP051959_heart 111 .13 RPM
SRP051959_colon 102 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005311 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
Dasypus novemcinctus ENSDNOG00000019487 possible_ortholog 65 retrogenes
Felis catus ENSFCAG00000004021 ortholog_one2one 35 retrogenes
Homo sapiens ENSG00000198242 ortholog_one2one 57 retrogenes
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000014179 ortholog_one2many 12 retrogenes
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
Nomascus leucogenys ENSNLEG00000002872 possible_ortholog 60 retrogenes
Procavia capensis ENSPCAG00000017002 possible_ortholog 30 retrogenes
Pongo abelii ENSPPYG00000008108 ortholog_one2one 49 retrogenes
Pteropus vampyrus ENSPVAG00000002922 possible_ortholog 32 retrogenes
Rattus norvegicus ENSRNOG00000023344 ortholog_one2one 6 retrogenes
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
Sus scrofa ENSSSCG00000017768 possible_ortholog 9 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011328 ortholog_one2one 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_20 99.36 100.00
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2. retro_cjac_30 98.04 98.08
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3. retro_cjac_46 91.61 99.36
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4. retro_cjac_118 97.44 100.00
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5. retro_cjac_154 99.36 100.00
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6. retro_cjac_258 87.18 100.00
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7. retro_cjac_315 97.44 100.00
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Download FASTA sequences of all ENSCJAG00000013126 retrocopies