RetrogeneDB ID: | retro_hsap_504 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:212482392..212482860(-) | ||
Located in intron of: | ENSG00000066027 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000225338 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSG00000198242 | ||
Aliases: | None | ||
Description: | ribosomal protein L23a [Source:HGNC Symbol;Acc:10317] |
Percent Identity: | 92.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNK |
MAPKAKKEAPAP.KAE.KAKALKAKKA.LKGVHSH...KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNK | |
Retrocopy | MAPKAKKEAPAPSKAEDKAKALKAKKAMLKGVHSHXXXKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNK |
Parental | LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRL |
LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYD..VAKVNTLIRPDGEKKAYV.L | |
Retrocopy | LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDTNVAKVNTLIRPDGEKKAYV*L |
Parental | APDYDALDVANKIGII |
APDY.ALDVANKI.II | |
Retrocopy | APDYNALDVANKIEII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 192 .56 RPM |
bodymap2_adrenal | 0 .04 RPM | 242 .36 RPM |
bodymap2_brain | 0 .07 RPM | 43 .88 RPM |
bodymap2_breast | 0 .06 RPM | 119 .40 RPM |
bodymap2_colon | 0 .00 RPM | 221 .12 RPM |
bodymap2_heart | 0 .04 RPM | 56 .34 RPM |
bodymap2_kidney | 0 .04 RPM | 85 .35 RPM |
bodymap2_liver | 0 .04 RPM | 67 .28 RPM |
bodymap2_lung | 0 .00 RPM | 194 .32 RPM |
bodymap2_lymph_node | 0 .04 RPM | 239 .11 RPM |
bodymap2_ovary | 0 .19 RPM | 286 .76 RPM |
bodymap2_prostate | 0 .00 RPM | 296 .99 RPM |
bodymap2_skeletal_muscle | 0 .15 RPM | 185 .41 RPM |
bodymap2_testis | 0 .04 RPM | 126 .20 RPM |
bodymap2_thyroid | 0 .04 RPM | 127 .58 RPM |
bodymap2_white_blood_cells | 0 .12 RPM | 333 .55 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_89399 | 963 libraries | 768 libraries | 98 libraries | 0 libraries | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_234 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .11 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .08 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .09 RPM |
GBR_HG00114 | 0 .05 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .04 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .11 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .12 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .05 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .14 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .04 RPM |