RetrogeneDB ID: | retro_hsap_1315 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:34955184..34955631(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000237450 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSG00000198242 | ||
Aliases: | None | ||
Description: | ribosomal protein L23a [Source:HGNC Symbol;Acc:10317] |
Percent Identity: | 83.66 % |
Parental protein coverage: | 96.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHK-KKKIRTSPTFRRPKTLRL-RRQP-KYPRKSAPR |
MA.KAKKEA.APPKAEAKAKALKAKKAV.K.VH.HK.KKK.RTSPTF.RP.TLRL.R..P.KYPRKSAPR | |
Retrocopy | MALKAKKEALAPPKAEAKAKALKAKKAVMKDVHIHK<KKKTRTSPTFQRPRTLRL<RGHP<KYPRKSAPR |
Parental | RNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAY |
RNKLD.YAIIKF..TTESAMKKIEDN.T.VF.VDVKANK.QIKQAVKKL.D.D.AKVNTLIRPDGEKKAY | |
Retrocopy | RNKLDRYAIIKFLWTTESAMKKIEDNTTYVFRVDVKANKQQIKQAVKKLPDNDAAKVNTLIRPDGEKKAY |
Parental | VRLAPDYDALDVA |
V.LAPDYD.LDVA | |
Retrocopy | VQLAPDYDVLDVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 192 .56 RPM |
bodymap2_adrenal | 0 .00 RPM | 242 .36 RPM |
bodymap2_brain | 0 .00 RPM | 43 .88 RPM |
bodymap2_breast | 0 .00 RPM | 119 .40 RPM |
bodymap2_colon | 0 .00 RPM | 221 .12 RPM |
bodymap2_heart | 0 .00 RPM | 56 .34 RPM |
bodymap2_kidney | 0 .00 RPM | 85 .35 RPM |
bodymap2_liver | 0 .00 RPM | 67 .28 RPM |
bodymap2_lung | 0 .00 RPM | 194 .32 RPM |
bodymap2_lymph_node | 0 .00 RPM | 239 .11 RPM |
bodymap2_ovary | 0 .00 RPM | 286 .76 RPM |
bodymap2_prostate | 0 .00 RPM | 296 .99 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 185 .41 RPM |
bodymap2_testis | 0 .00 RPM | 126 .20 RPM |
bodymap2_thyroid | 0 .00 RPM | 127 .58 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 333 .55 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |