RetrogeneDB ID: | retro_hsap_2567 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 22:51237082..51237543(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000184319 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSG00000198242 | ||
Aliases: | None | ||
Description: | ribosomal protein L23a [Source:HGNC Symbol;Acc:10317] |
Percent Identity: | 75. % |
Parental protein coverage: | 98.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAPKAKKEAPAPPKAEA-KAKALKAKK-AVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRR |
MAPKAK.EAPA.PKAEA......K.....V......H.KKKIR.S.TFRRPKTLRLRRQP.YPRKS.PRR | |
Retrocopy | MAPKAK-EAPAHPKAEA<QSEGFKGQEGSVERCPQPHAKKKIRMSLTFRRPKTLRLRRQPRYPRKSTPRR |
Parental | NKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYV |
NKL.HYAIIKFPL.TESA.KKIE.NNTLVF.VDVKANKHQI.QAVKKLYD.DVAKV.TLI.PD.E.KAYV | |
Retrocopy | NKLGHYAIIKFPLATESAVKKIEENNTLVFTVDVKANKHQIRQAVKKLYDSDVAKVTTLICPDKENKAYV |
Parental | RLAPDYDALDVANKIG |
RLAPDYDA.DV..K.G | |
Retrocopy | RLAPDYDAFDVVTKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 2 .50 RPM | 192 .56 RPM |
bodymap2_adrenal | 2 .23 RPM | 242 .36 RPM |
bodymap2_brain | 2 .18 RPM | 43 .88 RPM |
bodymap2_breast | 2 .65 RPM | 119 .40 RPM |
bodymap2_colon | 3 .87 RPM | 221 .12 RPM |
bodymap2_heart | 1 .66 RPM | 56 .34 RPM |
bodymap2_kidney | 2 .87 RPM | 85 .35 RPM |
bodymap2_liver | 0 .93 RPM | 67 .28 RPM |
bodymap2_lung | 1 .55 RPM | 194 .32 RPM |
bodymap2_lymph_node | 1 .81 RPM | 239 .11 RPM |
bodymap2_ovary | 2 .66 RPM | 286 .76 RPM |
bodymap2_prostate | 4 .94 RPM | 296 .99 RPM |
bodymap2_skeletal_muscle | 0 .24 RPM | 185 .41 RPM |
bodymap2_testis | 4 .36 RPM | 126 .20 RPM |
bodymap2_thyroid | 1 .32 RPM | 127 .58 RPM |
bodymap2_white_blood_cells | 1 .38 RPM | 333 .55 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 3 .74 RPM |
CEU_NA11843 | 5 .80 RPM |
CEU_NA11930 | 3 .32 RPM |
CEU_NA12004 | 3 .57 RPM |
CEU_NA12400 | 4 .10 RPM |
CEU_NA12751 | 2 .53 RPM |
CEU_NA12760 | 4 .36 RPM |
CEU_NA12827 | 3 .63 RPM |
CEU_NA12872 | 5 .33 RPM |
CEU_NA12873 | 3 .57 RPM |
FIN_HG00183 | 3 .02 RPM |
FIN_HG00277 | 4 .99 RPM |
FIN_HG00315 | 4 .94 RPM |
FIN_HG00321 | 4 .99 RPM |
FIN_HG00328 | 5 .18 RPM |
FIN_HG00338 | 4 .34 RPM |
FIN_HG00349 | 3 .36 RPM |
FIN_HG00375 | 3 .59 RPM |
FIN_HG00377 | 2 .72 RPM |
FIN_HG00378 | 4 .16 RPM |
GBR_HG00099 | 2 .47 RPM |
GBR_HG00111 | 3 .80 RPM |
GBR_HG00114 | 3 .55 RPM |
GBR_HG00119 | 4 .48 RPM |
GBR_HG00131 | 4 .05 RPM |
GBR_HG00133 | 3 .18 RPM |
GBR_HG00134 | 3 .54 RPM |
GBR_HG00137 | 4 .01 RPM |
GBR_HG00142 | 4 .39 RPM |
GBR_HG00143 | 3 .10 RPM |
TSI_NA20512 | 4 .95 RPM |
TSI_NA20513 | 2 .83 RPM |
TSI_NA20518 | 4 .25 RPM |
TSI_NA20532 | 1 .94 RPM |
TSI_NA20538 | 3 .59 RPM |
TSI_NA20756 | 4 .66 RPM |
TSI_NA20765 | 3 .92 RPM |
TSI_NA20771 | 3 .01 RPM |
TSI_NA20786 | 3 .43 RPM |
TSI_NA20798 | 5 .80 RPM |
YRI_NA18870 | 3 .32 RPM |
YRI_NA18907 | 3 .92 RPM |
YRI_NA18916 | 2 .63 RPM |
YRI_NA19093 | 3 .96 RPM |
YRI_NA19099 | 3 .12 RPM |
YRI_NA19114 | 3 .38 RPM |
YRI_NA19118 | 4 .08 RPM |
YRI_NA19213 | 4 .40 RPM |
YRI_NA19214 | 3 .91 RPM |
YRI_NA19223 | 2 .07 RPM |