Parental gene:

RAP1B, ENSOCUG00000029552

Aliases:None
Description:RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:4:47654127..47667429(+)


>ENSOCUG00000029552
ATGCGTGAATATAAACTAGTCGTTCTTGGTTCAGGAGGTGTTGGAAAGTCTGCTCTGACTGTACAGTTTGTTCAAGGAAT
TTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTACAGAAAGCAAGTTGAAGTAGATGCACAGCAATGTATGCTTG
AAATCTTGGATACTGCGGGAACGGAACAATTTACAGCAATGAGGGATTTGTACATGAAAAATGGACAAGGATTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATTCTGGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGAAAGGAACAAGGTCAAAATC
TAGCAAGACAATGGAACAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
CTAGTGCGGCAAATTAACAGAAAAACCCCAGTGCCTGGGAAGGCCCGCAAAAAGTCATCATGTCAGCTGCTTTAA

Library Parental gene expression (RPM)
SRP017611_brain 47 .19 RPM
SRP017611_kidney 67 .71 RPM
SRP017611_liver 20 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008637 ortholog_one2many 1 retrogene
retro_amel_103,
Cavia porcellus ENSCPOG00000008272 possible_ortholog 4 retrogenes
retro_cpor_1194, retro_cpor_632, retro_cpor_739, retro_cpor_85,
Dasypus novemcinctus ENSDNOG00000019724 ortholog_one2one 18 retrogenes
retro_dnov_1243, retro_dnov_1249, retro_dnov_1323, retro_dnov_1395, retro_dnov_1574, retro_dnov_1710, retro_dnov_1763, retro_dnov_1841, retro_dnov_186, retro_dnov_1976, retro_dnov_2033, retro_dnov_217, retro_dnov_2679, retro_dnov_298, retro_dnov_318, retro_dnov_719, retro_dnov_761, retro_dnov_84,
Erinaceus europaeus ENSEEUG00000010052 ortholog_one2one 1 retrogene
retro_eeur_327,
Echinops telfairi ENSETEG00000000242 possible_ortholog 1 retrogene
retro_etel_11,
Gorilla gorilla ENSGGOG00000025649 possible_ortholog 1 retrogene
retro_ggor_2836,
Loxodonta africana ENSLAFG00000016460 possible_ortholog 1 retrogene
retro_lafr_482,
Microcebus murinus ENSMICG00000013148 ortholog_one2one 1 retrogene
retro_mmur_116,
Macaca mulatta ENSMMUG00000011442 ortholog_one2one 2 retrogenes
retro_mmul_1151, retro_mmul_1863,
Oryctolagus cuniculus ENSOCUG00000022455 other_paralog 1 retrogene
retro_ocun_850,
Otolemur garnettii ENSOGAG00000005746 possible_ortholog 2 retrogenes
retro_ogar_2260, retro_ogar_272,
Pongo abelii ENSPPYG00000004751 possible_ortholog 1 retrogene
retro_pabe_3403,
Pan troglodytes ENSPTRG00000005197 ortholog_one2one 3 retrogenes
retro_ptro_1812, retro_ptro_2383, retro_ptro_2877,
Rattus norvegicus ENSRNOG00000007048 ortholog_one2one 4 retrogenes
retro_rnor_2479, retro_rnor_870, retro_rnor_871, retro_rnor_872,
Sus scrofa ENSSSCG00000021148 possible_ortholog 1 retrogene
retro_sscr_1125,
Sus scrofa ENSSSCG00000030014 ortholog_one2one 2 retrogenes
retro_sscr_435, retro_sscr_909,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_597 71.68 60.33
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2. retro_ocun_636 63.33 64.13
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3. retro_ocun_796 95.51 84.78
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4. retro_ocun_1132 75.53 100.00
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5. retro_ocun_1200 81.72 100.00
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Download FASTA sequences of all ENSOCUG00000029552 retrocopies