Parental gene: | RAP1B, ENSOCUG00000029552 |
| Aliases: | None |
| Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 4:47654127..47667429(+) |
>ENSOCUG00000029552
ATGCGTGAATATAAACTAGTCGTTCTTGGTTCAGGAGGTGTTGGAAAGTCTGCTCTGACTGTACAGTTTGTTCAAGGAAT
TTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTACAGAAAGCAAGTTGAAGTAGATGCACAGCAATGTATGCTTG
AAATCTTGGATACTGCGGGAACGGAACAATTTACAGCAATGAGGGATTTGTACATGAAAAATGGACAAGGATTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATTCTGGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGAAAGGAACAAGGTCAAAATC
TAGCAAGACAATGGAACAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
CTAGTGCGGCAAATTAACAGAAAAACCCCAGTGCCTGGGAAGGCCCGCAAAAAGTCATCATGTCAGCTGCTTTAA
ATGCGTGAATATAAACTAGTCGTTCTTGGTTCAGGAGGTGTTGGAAAGTCTGCTCTGACTGTACAGTTTGTTCAAGGAAT
TTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTACAGAAAGCAAGTTGAAGTAGATGCACAGCAATGTATGCTTG
AAATCTTGGATACTGCGGGAACGGAACAATTTACAGCAATGAGGGATTTGTACATGAAAAATGGACAAGGATTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATTCTGGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGAAAGGAACAAGGTCAAAATC
TAGCAAGACAATGGAACAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
CTAGTGCGGCAAATTAACAGAAAAACCCCAGTGCCTGGGAAGGCCCGCAAAAAGTCATCATGTCAGCTGCTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 20 .81 RPM |
| SRP017611_kidney | 67 .71 RPM |
| SRP017611_brain | 47 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008637 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000008272 | possible_ortholog | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000019724 | ortholog_one2one | 18 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000010052 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000242 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000025649 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000016460 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000013148 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011442 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000022455 | other_paralog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000005746 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004751 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005197 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007048 | ortholog_one2one | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000021148 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000030014 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_597 | 71.68 | 60.33 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_636 | 63.33 | 64.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_796 | 95.51 | 84.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_1132 | 75.53 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1200 | 81.72 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000029552 retrocopies