RetrogeneDB ID: | retro_ocun_1132 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 20:7975384..7975934(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027752 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSOCUG00000029552 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 75.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDAQQCMLE-ILDTAGTEQFTAMR |
MREY..V.LGS.GV.KSALTVQFVQGIFVE.KYDPTIEDSY.K.V.V.AQQC.L..ILDTAG.EQFT..R | |
Retrocopy | MREYTPVILGSRGVEKSALTVQFVQGIFVE<KYDPTIEDSYGKRVAVSAQQCTLK<ILDTAGMEQFTTVR |
Parental | DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQW |
DLY.K.G...ALV..ITAQST.NDLQDLREQIL.V.DTDDVP.IL.G.KCDLED.RV.GKE.GQN.ARQ. | |
Retrocopy | DLYVKSGPDSALVHFITAQSTWNDLQDLREQILQVRDTDDVPAILAGSKCDLEDQRVAGKERGQNPARQQ |
Parental | NNCAFLES-SAKSKINVNEIFYDLVRQINRKTPVPGKA-RKKSSCQLL |
NNCAFL...SAKSKINVN..FYDLV..IN..TPVPGKA.R.KSSC.LL | |
Retrocopy | NNCAFLNT<SAKSKINVNDFFYDLVQ*INGRTPVPGKA>REKSSCSLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 47 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .71 RPM |
SRP017611_liver | 0 .00 RPM | 20 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019724 | 18 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010052 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025649 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013148 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011442 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022455 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029552 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004751 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005197 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000007048 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000021148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies |