Parental gene:

RAP1B, ENSSSCG00000021148

Aliases:None
Description:RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857]
Organism:Pig (Sus scrofa)
Coordinates:GL895262.2:33359..43550(+)


>ENSSSCG00000021148
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAATCTGCTCTGACCGTACAATTTGTTCAAGGAAT
TTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCGCAACAGTGTATGCTTG
AAATCTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGGGACTTGTACATGAAAAATGGACAAGGCTTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATCCTGGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGAAAGGAACAAGGTCAAAATC
TAGCAAGACAATGGAACAACTGTGCATTCTTAGAATCCTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
TTAGTGCGACAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCCCGCAAAAAGTCATCATGTCAACTGCTTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .00 RPM
SRP014902_testis 0 .00 RPM
SRP018288_heart 0 .00 RPM
SRP018288_kidney 0 .00 RPM
SRP018288_liver 0 .00 RPM
SRP018288_lung 0 .00 RPM
SRP018856_adipose 0 .00 RPM
SRP035408_brain 0 .00 RPM
SRP035408_liver 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008637 possible_ortholog 1 retrogene
retro_amel_103,
Cavia porcellus ENSCPOG00000008272 ortholog_one2one 4 retrogenes
retro_cpor_1194, retro_cpor_632, retro_cpor_739, retro_cpor_85,
Dasypus novemcinctus ENSDNOG00000019724 possible_ortholog 18 retrogenes
retro_dnov_1243, retro_dnov_1249, retro_dnov_1323, retro_dnov_1395, retro_dnov_1574, retro_dnov_1710, retro_dnov_1763, retro_dnov_1841, retro_dnov_186, retro_dnov_1976, retro_dnov_2033, retro_dnov_217, retro_dnov_2679, retro_dnov_298, retro_dnov_318, retro_dnov_719, retro_dnov_761, retro_dnov_84,
Dipodomys ordii ENSDORG00000001086 ortholog_one2one 1 retrogene
retro_dord_521,
Erinaceus europaeus ENSEEUG00000010052 possible_ortholog 1 retrogene
retro_eeur_327,
Echinops telfairi ENSETEG00000000242 ortholog_one2one 1 retrogene
retro_etel_11,
Homo sapiens ENSG00000127314 ortholog_one2one 2 retrogenes
retro_hsap_3338, retro_hsap_4234,
Loxodonta africana ENSLAFG00000016460 ortholog_one2one 1 retrogene
retro_lafr_482,
Microcebus murinus ENSMICG00000013148 possible_ortholog 1 retrogene
retro_mmur_116,
Myotis lucifugus ENSMLUG00000016606 ortholog_one2one 2 retrogenes
retro_mluc_1126, retro_mluc_2211,
Macaca mulatta ENSMMUG00000011442 possible_ortholog 2 retrogenes
retro_mmul_1151, retro_mmul_1863,
Monodelphis domestica ENSMODG00000007323 ortholog_one2one 5 retrogenes
retro_mdom_11, retro_mdom_1570, retro_mdom_1756, retro_mdom_1897, retro_mdom_429,
Oryctolagus cuniculus ENSOCUG00000029552 possible_ortholog 5 retrogenes
retro_ocun_1132, retro_ocun_1200, retro_ocun_597, retro_ocun_636, retro_ocun_796,
Otolemur garnettii ENSOGAG00000005746 possible_ortholog 2 retrogenes
retro_ogar_2260, retro_ogar_272,
Procavia capensis ENSPCAG00000010977 ortholog_one2one 1 retrogene
retro_pcap_8,
Pongo abelii ENSPPYG00000004751 ortholog_one2one 1 retrogene
retro_pabe_3403,
Pan troglodytes ENSPTRG00000005197 possible_ortholog 3 retrogenes
retro_ptro_1812, retro_ptro_2383, retro_ptro_2877,
Rattus norvegicus ENSRNOG00000007048 possible_ortholog 4 retrogenes
retro_rnor_2479, retro_rnor_870, retro_rnor_871, retro_rnor_872,
Sus scrofa ENSSSCG00000006753 other_paralog 1 retrogene
retro_sscr_520,
Sus scrofa ENSSSCG00000029741 other_paralog 1 retrogene
retro_sscr_634,
Sus scrofa ENSSSCG00000030014 within_species_paralog 2 retrogenes
retro_sscr_435, retro_sscr_909,
Tarsius syrichta ENSTSYG00000000192 possible_ortholog 1 retrogene
retro_tsyr_910,
Tursiops truncatus ENSTTRG00000015712 ortholog_one2one 2 retrogenes
retro_ttru_1105, retro_ttru_134,
Vicugna pacos ENSVPAG00000000931 ortholog_one2one 2 retrogenes
retro_vpac_283, retro_vpac_408,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1125 80.72 89.67
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000021148 retrocopies