Parental gene:

RAP1B, ENSPTRG00000005197

Aliases:None
Description:Pan troglodytes RAP1B, member of RAS oncogene family (RAP1B), mRNA. [Source:RefSeq mRNA;Acc:NM_001098545]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:68375085..68425792(+)


>ENSPTRG00000005197
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTGCTTTGACTGTACAATTTGTTCAAGGAAT
TTTTGTAGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCACAACAGTGTATGCTTG
AAATCTTGGATACTGCAGGAACGGAGCAATTTACAGCAATGAGGGATTTATACATGAAAAATGGACAAGGATTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAACGATTTACAAGACCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATTCTTGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGGAAGGAACAAGGTCAAAATC
TAGCAAGACAATGGAACAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
CTAGTGCGGCAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCTCGCAAAAAGTCATCATGTCAGCTGCTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 19 .66 RPM
SRP007412_cerebellum 18 .82 RPM
SRP007412_heart 31 .92 RPM
SRP007412_kidney 67 .97 RPM
SRP007412_liver 50 .28 RPM
SRP007412_testis 82 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008637 ortholog_one2many 1 retrogene
retro_amel_103,
Cavia porcellus ENSCPOG00000008272 possible_ortholog 4 retrogenes
retro_cpor_1194, retro_cpor_632, retro_cpor_739, retro_cpor_85,
Dasypus novemcinctus ENSDNOG00000019724 ortholog_one2one 18 retrogenes
retro_dnov_1243, retro_dnov_1249, retro_dnov_1323, retro_dnov_1395, retro_dnov_1574, retro_dnov_1710, retro_dnov_1763, retro_dnov_1841, retro_dnov_186, retro_dnov_1976, retro_dnov_2033, retro_dnov_217, retro_dnov_2679, retro_dnov_298, retro_dnov_318, retro_dnov_719, retro_dnov_761, retro_dnov_84,
Erinaceus europaeus ENSEEUG00000010052 ortholog_one2one 1 retrogene
retro_eeur_327,
Echinops telfairi ENSETEG00000000242 possible_ortholog 1 retrogene
retro_etel_11,
Gorilla gorilla ENSGGOG00000025649 possible_ortholog 1 retrogene
retro_ggor_2836,
Loxodonta africana ENSLAFG00000016460 possible_ortholog 1 retrogene
retro_lafr_482,
Microcebus murinus ENSMICG00000013148 ortholog_one2one 1 retrogene
retro_mmur_116,
Macaca mulatta ENSMMUG00000011442 ortholog_one2one 2 retrogenes
retro_mmul_1151, retro_mmul_1863,
Oryctolagus cuniculus ENSOCUG00000029552 ortholog_one2one 5 retrogenes
retro_ocun_1132, retro_ocun_1200, retro_ocun_597, retro_ocun_636, retro_ocun_796,
Otolemur garnettii ENSOGAG00000005746 possible_ortholog 2 retrogenes
retro_ogar_2260, retro_ogar_272,
Pongo abelii ENSPPYG00000004751 possible_ortholog 1 retrogene
retro_pabe_3403,
Pan troglodytes ENSPTRG00000001102 within_species_paralog 1 retrogene
retro_ptro_937,
Pan troglodytes ENSPTRG00000019108 other_paralog 1 retrogene
retro_ptro_2511,
Rattus norvegicus ENSRNOG00000007048 ortholog_one2one 4 retrogenes
retro_rnor_2479, retro_rnor_870, retro_rnor_871, retro_rnor_872,
Sus scrofa ENSSSCG00000021148 possible_ortholog 1 retrogene
retro_sscr_1125,
Sus scrofa ENSSSCG00000030014 ortholog_one2one 2 retrogenes
retro_sscr_435, retro_sscr_909,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1812 73.51 100.00
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2. retro_ptro_2383 79.62 84.24
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3. retro_ptro_2877 87.17 100.00
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Download FASTA sequences of all ENSPTRG00000005197 retrocopies