RetrogeneDB ID: | retro_dnov_217 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_271:242429..242794(-) | ||
Located in intron of: | ENSDNOG00000009371 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSDNOG00000019724 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 75.61 % |
Parental protein coverage: | 78.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDL |
.RE.KL.V.GSGGVGKSALT.QF.QGIFVEK.D..IE.SYRKQ.EV..QQ..LEILD.A.TEQFT.MRDL | |
Retrocopy | VRECKLIVFGSGGVGKSALTGQFIQGIFVEKHDLAIEESYRKQAEVECQQRTLEILDRAVTEQFTVMRDL |
Parental | YMKNGKGFALVYSITAQSTFNDLQDLREQIL-RKDTDDVP-MILVGNKCDLED |
.MKNG.GFALVYSITAQS..NDL.DLREQ.L..KDT.DVP.MILVG.KCDLE. | |
Retrocopy | NMKNGQGFALVYSITAQSILNDL*DLREQTLWVKDTEDVP<MILVGKKCDLEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 6 .81 RPM |
SRP012922_cerebellum | 0 .00 RPM | 1 .92 RPM |
SRP012922_heart | 0 .00 RPM | 1 .16 RPM |
SRP012922_kidney | 0 .00 RPM | 4 .38 RPM |
SRP012922_liver | 0 .00 RPM | 4 .33 RPM |
SRP012922_lung | 0 .15 RPM | 8 .25 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .38 RPM |
SRP012922_spleen | 0 .00 RPM | 15 .68 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007809 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015293 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000017413 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019724 | 18 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010052 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025649 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013148 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011442 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000029552 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004751 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005197 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000007048 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000021148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies |