Parental gene: | RAP1B, ENSDNOG00000019724 |
| Aliases: | None |
| Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_2704:60313..66966(+) |
>ENSDNOG00000019724
ATGCGTGAATATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTGCTCTGACTGTGCAGTTTGTTCAAGGAAT
TTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCTCAACAGTGTATGCTTG
AAATCTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGGGATTTGTACATGAAAAATGGAAAAGGCTTCGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAAAAGACACTGATGA
TGTTCCAATGATTCTGGTTGGTAATAAGTGTGACTTGGAGGATGAAAGAGTTGTAGGAAAGGAGCAAGGTCAAAATCTAG
CAAGACAATGGAATAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAG
ATGCGTGAATATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTGCTCTGACTGTGCAGTTTGTTCAAGGAAT
TTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCTCAACAGTGTATGCTTG
AAATCTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGGGATTTGTACATGAAAAATGGAAAAGGCTTCGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAAAAGACACTGATGA
TGTTCCAATGATTCTGGTTGGTAATAAGTGTGACTTGGAGGATGAAAGAGTTGTAGGAAAGGAGCAAGGTCAAAATCTAG
CAAGACAATGGAATAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 6 .81 RPM |
| SRP012922_cerebellum | 1 .92 RPM |
| SRP012922_heart | 1 .16 RPM |
| SRP012922_kidney | 4 .38 RPM |
| SRP012922_liver | 4 .33 RPM |
| SRP012922_lung | 8 .25 RPM |
| SRP012922_quadricep_muscle | 1 .38 RPM |
| SRP012922_spleen | 15 .68 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008637 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000008272 | possible_ortholog | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000007809 | within_species_paralog | 5 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000015293 | other_paralog | 3 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000017413 | other_paralog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000010052 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000242 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000025649 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000016460 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000013148 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011442 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000029552 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000005746 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004751 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005197 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007048 | ortholog_one2one | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000021148 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000030014 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_84 | 66.24 | 98.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_186 | 77.92 | 97.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_217 | 75.61 | 78.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_298 | 82.80 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_318 | 75.84 | 95.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_dnov_719 | 70.49 | 78.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_dnov_761 | 73.95 | 74.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_dnov_1243 | 62.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_dnov_1249 | 74.75 | 62.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_dnov_1323 | 98.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_dnov_1395 | 82.57 | 69.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_dnov_1574 | 74.47 | 59.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_dnov_1710 | 74.51 | 64.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_dnov_1763 | 65.06 | 52.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_dnov_1841 | 77.12 | 97.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_dnov_1976 | 77.69 | 75.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_dnov_2033 | 69.66 | 55.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_dnov_2679 | 81.56 | 89.03 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000019724 retrocopies