RetrogeneDB ID: | retro_pabe_2058 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:47741818..47742280(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSPPYG00000016743 | ||
Aliases: | PTP4A1, PRL1 | ||
Description: | protein tyrosine phosphatase type IVA 1 [Source:RefSeq peptide;Acc:NP_001126324] |
Percent Identity: | 80.89 % |
Parental protein coverage: | 89.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MARMNRPAPVEVTYKNMR-FLITHNPTNATLNKFIEELKKYGVTTI-VRVCEATYDTALVEKEGIHVLDW |
.A.MNRPAPVEVTYKN.R.FL.THNPTN.TLNKF.EELKK.GV.TI..RVCEATYDT.L.EKEG.HVLDW | |
Retrocopy | IAQMNRPAPVEVTYKNKR>FLTTHNPTNVTLNKFVEELKKHGVFTI>IRVCEATYDTTLLEKEGTHVLDW |
Parental | PFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRR |
PFDDGAPPSN.I.DDWLSLVKIKF..EP.CC.AVHC.AGLGRAPVLVALALIEG.MK.ED.VQF.R.K.. | |
Retrocopy | PFDDGAPPSNKI-DDWLSLVKIKFHKEPRCCTAVHCIAGLGRAPVLVALALIEGKMKDEDVVQFARKKQH |
Parental | GAFNSKQ-LLYLEKYRP |
GAFNSK..LLYLEKYRP | |
Retrocopy | GAFNSKL>LLYLEKYRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 29 .36 RPM |
SRP007412_cerebellum | 0 .00 RPM | 24 .56 RPM |
SRP007412_heart | 0 .03 RPM | 30 .52 RPM |
SRP007412_kidney | 0 .03 RPM | 31 .12 RPM |
SRP007412_liver | 0 .06 RPM | 310 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2171 |
Pan troglodytes | retro_ptro_1657 |
Gorilla gorilla | retro_ggor_1723 |
Callithrix jacchus | retro_cjac_2812 |