RetrogeneDB ID: | retro_pabe_2660 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:86558425..86558918(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSPPYG00000016743 | ||
Aliases: | PTP4A1, PRL1 | ||
Description: | protein tyrosine phosphatase type IVA 1 [Source:RefSeq peptide;Acc:NP_001126324] |
Percent Identity: | 80.84 % |
Parental protein coverage: | 95.38 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTALVEK-EGIHVLDWPFDDGAPPS |
PVEVT.KNMRFLITHN.TN.TLNKF..ELKKYGVTTI.RVCEA.Y.T.LVEK.EGIHVLDWPFDDG.PPS | |
Retrocopy | PVEVTQKNMRFLITHNQTNVTLNKFRRELKKYGVTTIIRVCEAIYGTTLVEK<EGIHVLDWPFDDGEPPS |
Parental | NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVA-LALIEGGMKYEDAVQFIRQKRRGAFNSKQL |
N.I.DDWLS.VKIKF.EEPG.CIA.HCVAG..RAP.LVA.LALIEGGMKYEDAVQFIRQ....AFNSK.L | |
Retrocopy | N*IFDDWLSIVKIKFCEEPG*CIAIHCVAGFQRAPILVA<LALIEGGMKYEDAVQFIRQNQHEAFNSKKL |
Parental | LYLEKYRPKMRLRFKDSNGHRNNCCIQ |
L.LEKY.PK..L.FKDS.GHRNNCCIQ | |
Retrocopy | L*LEKYPPKIQLLFKDSKGHRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 29 .36 RPM |
SRP007412_cerebellum | 0 .00 RPM | 24 .56 RPM |
SRP007412_heart | 0 .00 RPM | 30 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .12 RPM |
SRP007412_liver | 0 .00 RPM | 310 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3212 |
Pan troglodytes | retro_ptro_2239 |
Gorilla gorilla | retro_ggor_2180 |