Parental gene:

GABARAP, ENSSSCG00000017936

Aliases:None
Description:Sus scrofa GABA(A) receptor-associated protein (GABARAP), mRNA. [Source:RefSeq mRNA;Acc:NM_001190288]
Organism:Pig (Sus scrofa)
Coordinates:12:54842363..54844400(+)


>ENSSSCG00000017936
ATGAAGTTCGTGTATAAAGAAGAGCATCCGTTCGAGAAGCGTCGCTCTGAGGGCGAGAAGATCCGAAAGAAATACCCGGA
CCGGGTGCCGGTGATAGTAGAAAAGGCTCCCAAAGCTCGGATAGGAGACCTAGATAAAAAGAAATACCTGGTGCCTTCTG
ATCTCACAGTTGGTCAGTTCTACTTCTTGATCCGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTTGTC
AACAATGTCATTCCACCCACCAGTGCCACGATGGGTCAGCTGTACCAGGAACACCATGAAGAAGACTTCTTTCTGTACAT
TGCCTACAGTGATGAAAGTGTCTATGGTCTGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .40 RPM
SRP014902_testis 0 .57 RPM
SRP018288_heart 0 .10 RPM
SRP018288_kidney 0 .99 RPM
SRP018288_liver 1 .28 RPM
SRP018288_lung 0 .00 RPM
SRP018856_adipose 0 .21 RPM
SRP035408_brain 0 .00 RPM
SRP035408_liver 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014883 ortholog_one2many 1 retrogene
retro_btau_905,
Ciona intestinalis ENSCING00000012473 ortholog_one2many 1 retrogene
retro_cint_25,
Callithrix jacchus ENSCJAG00000016655 possible_ortholog 2 retrogenes
retro_cjac_2851, retro_cjac_3820,
Dipodomys ordii ENSDORG00000005229 ortholog_one2many 1 retrogene
retro_dord_308,
Echinops telfairi ENSETEG00000004652 possible_ortholog 7 retrogenes
retro_etel_1020, retro_etel_1078, retro_etel_1562, retro_etel_2068, retro_etel_493, retro_etel_666, retro_etel_976,
Gorilla gorilla ENSGGOG00000013770 possible_ortholog 1 retrogene
retro_ggor_821,
Loxodonta africana ENSLAFG00000000744 possible_ortholog 1 retrogene
retro_lafr_61,
Macaca mulatta ENSMMUG00000010545 possible_ortholog 1 retrogene
retro_mmul_155,
Mustela putorius furo ENSMPUG00000010473 possible_ortholog 2 retrogenes
retro_mputfur_1290, retro_mputfur_258,
Mus musculus ENSMUSG00000018567 possible_ortholog 1 retrogene
retro_mmus_3107,
Nomascus leucogenys ENSNLEG00000008049 possible_ortholog 2 retrogenes
retro_nleu_1670, retro_nleu_4,
Oryctolagus cuniculus ENSOCUG00000006997 possible_ortholog 1 retrogene
retro_ocun_311,
Otolemur garnettii ENSOGAG00000004388 possible_ortholog 2 retrogenes
retro_ogar_1212, retro_ogar_1224,
Pongo abelii ENSPPYG00000007901 possible_ortholog 1 retrogene
retro_pabe_122,
Pan troglodytes ENSPTRG00000034115 possible_ortholog 1 retrogene
retro_ptro_60,
Rattus norvegicus ENSRNOG00000017417 possible_ortholog 2 retrogenes
retro_rnor_1818, retro_rnor_2093,
Sus scrofa ENSSSCG00000002655 within_species_paralog 2 retrogenes
retro_sscr_188, retro_sscr_737,
Drosophila melanogaster FBgn0052672 ortholog_many2many 1 retrogene
retro_dmel_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_163 80.87 98.29
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Download FASTA sequences of all ENSSSCG00000017936 retrocopies