Parental gene:

GABARAP, ENSPTRG00000034115

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:7297193..7299201(-)


>ENSPTRG00000034115
ATGAAGTTCGTGTACAAAGAAGAGCATCCGTTCGAGAAGCGCCGCTCTGAGGGCGAGAAGATCCGAAAGAAATACCCGGA
CCGGGTGCCGGTGATAGTAGAAAAGGCTCCCAAAGCTCGGATAGGAGACCTGGACAAAAAGAAATACCTGGTGCCTTCTG
ATCTCACAGTTGGTCAGTTCTACTTCTTGATCCGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTTGTC
AACAATGTCATTCCACCCACCAGTGCCACAATGGGTCAGCTCTACCAGGAACACCATGAAGAAGACTTCTTTCTCTACAT
TGCCTACAGTGACGAAAGTGTCTACGGTCTGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 148 .88 RPM
SRP007412_cerebellum 107 .55 RPM
SRP007412_heart 72 .02 RPM
SRP007412_kidney 182 .49 RPM
SRP007412_liver 107 .30 RPM
SRP007412_testis 245 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000012473 ortholog_one2one 1 retrogene
retro_cint_25,
Callithrix jacchus ENSCJAG00000016655 ortholog_one2one 2 retrogenes
retro_cjac_2851, retro_cjac_3820,
Gorilla gorilla ENSGGOG00000013770 ortholog_one2one 1 retrogene
retro_ggor_821,
Loxodonta africana ENSLAFG00000000744 possible_ortholog 1 retrogene
retro_lafr_61,
Macaca mulatta ENSMMUG00000010545 ortholog_one2many 1 retrogene
retro_mmul_155,
Mus musculus ENSMUSG00000018567 ortholog_one2one 1 retrogene
retro_mmus_3107,
Nomascus leucogenys ENSNLEG00000008049 ortholog_one2one 2 retrogenes
retro_nleu_1670, retro_nleu_4,
Oryctolagus cuniculus ENSOCUG00000006997 ortholog_one2one 1 retrogene
retro_ocun_311,
Pongo abelii ENSPPYG00000007901 ortholog_one2one 1 retrogene
retro_pabe_122,
Pan troglodytes ENSPTRG00000008362 within_species_paralog 2 retrogenes
retro_ptro_250, retro_ptro_2794,
Pan troglodytes ENSPTRG00000008445 within_species_paralog 3 retrogenes
retro_ptro_2505, retro_ptro_367, retro_ptro_63,
Rattus norvegicus ENSRNOG00000017417 ortholog_one2one 2 retrogenes
retro_rnor_1818, retro_rnor_2093,
Sus scrofa ENSSSCG00000017936 possible_ortholog 1 retrogene
retro_sscr_163,
Drosophila melanogaster FBgn0052672 ortholog_one2many 1 retrogene
retro_dmel_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_60 84.48 99.15
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Download FASTA sequences of all ENSPTRG00000034115 retrocopies