RetrogeneDB ID: | retro_cfam_1617 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 37:10264748..10265304(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000009211 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:E2RA64] |
Percent Identity: | 81.91 % |
Parental protein coverage: | 51.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IQNLLKEDHTPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIV |
IQNLLKED.TPQNKI.VVGVGAVGMACAIS.LMKDLADELALV.VMED.LKGEMMDLQHGSLFLRTPKI. | |
Retrocopy | IQNLLKEDPTPQNKIAVVGVGAVGMACAISVLMKDLADELALVNVMEDELKGEMMDLQHGSLFLRTPKIF |
Parental | SGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAW |
SGKDYNVTAN.KLVIITAGA.QQEGES.L.LVQ..VNIFK.IIPNIVKY.PNCKLLVVS.P.DILTYV.W | |
Retrocopy | SGKDYNVTANTKLVIITAGACQQEGESHLTLVQYHVNIFKIIIPNIVKYNPNCKLLVVSKPKDILTYVGW |
Parental | KISGFPKNRVIGSGCNLDSARFRYLMGERLGVHP-LSCHGWVLGEHGD |
KISGFP.NRVIGSGC.L.SA.F........G..P.LS.HGWVLGEH.D | |
Retrocopy | KISGFPPNRVIGSGCKLHSAWF--VLEGKAGSSP>LSDHGWVLGEHED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 130 .66 RPM |
SRP017611_brain | 0 .00 RPM | 167 .60 RPM |
SRP017611_kidney | 0 .00 RPM | 598 .03 RPM |
SRP017611_liver | 0 .00 RPM | 198 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009211 | 8 retrocopies |
retro_cfam_1061, retro_cfam_1149, retro_cfam_1182, retro_cfam_1317, retro_cfam_1617 , retro_cfam_1946, retro_cfam_2006, retro_cfam_309,
|
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Dipodomys ordii | ENSDORG00000003524 | 2 retrocopies | |
Felis catus | ENSFCAG00000015735 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000016343 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000014 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |