Parental gene: | LDHB, ENSCAFG00000012195 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 27:25473221..25492908(+) |
>ENSCAFG00000012195
CTGAAGATTTTGCATAAACATTTATCACTATTTTCATGCCACTGTATTTATGAAGTATATGGCACAATGGCAACTCTTAA
GGAAAAACTGATTGCACCAGTTGCAGAAGAAGAGGCTGCAATCCCAAACAATAAGATCACTGTAGTGGGTGTTGGACAAG
TTGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCCCTTGTGGATGTTTTAGAAGATAAA
CTCAAAGGAGAAATGATGGATCTACAGCATGGGAGCTTATTTCTACAGACACCTAAAATTGTGGCAGATAAAGATTACTC
TGTGACTGCCAATTCTAAGATTGTGGTGGTGACTGCAGGAGTCCGCCAGCAGGAGGGAGAGAGCCGCCTCAATCTGGTGC
AAAGGAATGTTAATGTCTTCAAATTCATTATTCCTCAGATAGTCAAGTACAGTCCTGATTGTATCATAATTGTGGTTTCC
AACCCAGTGGATATTCTTACATATGTTACCTGGAAACTAAGTGGACTACCCAAGCACCGTGTGATTGGAAGTGGGTGTAA
TCTGGATTCTGCTAGATTTCGCTATCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCATGGATGGATTTTGG
GAGAACATGGTGACTCAAGTGTGGCTGTGTGGAGTGGAGTGAATGTGGCAGGTGTTTCTCTTCAGGAACTGAATCCAGAA
ATGGGAACAGACAACGACAGTGAAAATTGGAAGGAAGTTCATCTGATTTTTTTTCTTAGTGCCTATGAAGTCATCAAGCT
AAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTCATTGAATCCATGTTGAAAAATCTCTCCAGGATTC
ATCCAGTGTCAACAATGGTGAAGGGTATGTATGGTATTGAGAACGAAGTCTTCCTGAGTCTTCCGTGTATCCTGAACGCT
CGGGGCTTAACCAGTGTGATCAATCAGAAGCTGAAGGATGATGAGGTTGCCCAGCTCAAGAAAAGTGCAGATACCTTGTG
GGATATCCAGAAAGACCTAAAAGATCTGTGA
CTGAAGATTTTGCATAAACATTTATCACTATTTTCATGCCACTGTATTTATGAAGTATATGGCACAATGGCAACTCTTAA
GGAAAAACTGATTGCACCAGTTGCAGAAGAAGAGGCTGCAATCCCAAACAATAAGATCACTGTAGTGGGTGTTGGACAAG
TTGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCCCTTGTGGATGTTTTAGAAGATAAA
CTCAAAGGAGAAATGATGGATCTACAGCATGGGAGCTTATTTCTACAGACACCTAAAATTGTGGCAGATAAAGATTACTC
TGTGACTGCCAATTCTAAGATTGTGGTGGTGACTGCAGGAGTCCGCCAGCAGGAGGGAGAGAGCCGCCTCAATCTGGTGC
AAAGGAATGTTAATGTCTTCAAATTCATTATTCCTCAGATAGTCAAGTACAGTCCTGATTGTATCATAATTGTGGTTTCC
AACCCAGTGGATATTCTTACATATGTTACCTGGAAACTAAGTGGACTACCCAAGCACCGTGTGATTGGAAGTGGGTGTAA
TCTGGATTCTGCTAGATTTCGCTATCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCATGGATGGATTTTGG
GAGAACATGGTGACTCAAGTGTGGCTGTGTGGAGTGGAGTGAATGTGGCAGGTGTTTCTCTTCAGGAACTGAATCCAGAA
ATGGGAACAGACAACGACAGTGAAAATTGGAAGGAAGTTCATCTGATTTTTTTTCTTAGTGCCTATGAAGTCATCAAGCT
AAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTCATTGAATCCATGTTGAAAAATCTCTCCAGGATTC
ATCCAGTGTCAACAATGGTGAAGGGTATGTATGGTATTGAGAACGAAGTCTTCCTGAGTCTTCCGTGTATCCTGAACGCT
CGGGGCTTAACCAGTGTGATCAATCAGAAGCTGAAGGATGATGAGGTTGCCCAGCTCAAGAAAAGTGCAGATACCTTGTG
GGATATCCAGAAAGACCTAAAAGATCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 105 .67 RPM |
| SRP017611_kidney | 329 .39 RPM |
| SRP017611_liver | 7 .47 RPM |
| SRP012049_cerebellum | 92 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016175 | possible_ortholog | 4 retrogenes | |
| Bos taurus | ENSBTAG00000019603 | possible_ortholog | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000009211 | within_species_paralog | 8 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000007658 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000007138 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000013620 | possible_ortholog | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000019955 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000012639 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000111716 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015758 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000000972 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000004825 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000017183 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000012155 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002679 | possible_ortholog | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000017786 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000000172 | possible_ortholog | 5 retrogenes | |
| Mus musculus | ENSMUSG00000030246 | possible_ortholog | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000022015 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000004763 | possible_ortholog | 9 retrogenes | |
| Pongo abelii | ENSPPYG00000004356 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000004762 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000002462 | possible_ortholog | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013000 | possible_ortholog | 3 retrogenes | |
| Sorex araneus | ENSSARG00000002565 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000000576 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000022058 | possible_ortholog | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000013759 | possible_ortholog | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_17 | 98.20 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_93 | 96.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_111 | 95.26 | 63.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_174 | 94.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_701 | 94.02 | 65.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1068 | 95.56 | 63.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_1674 | 87.76 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_1700 | 95.80 | 71.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cfam_1836 | 79.40 | 64.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000012195 retrocopies