RetrogeneDB ID: | retro_cfam_17 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:77492906..77493911(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000017824 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSCAFG00000012195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS |
MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS | |
Retrocopy | MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS |
Parental | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
LFLQTPKI.ADKDYSVTANSKIVVVTAGVRQQEGES.LNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP | |
Retrocopy | LFLQTPKIAADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
Parental | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGV |
VDILTYVTWKLSGLPK.RVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGV | |
Retrocopy | VDILTYVTWKLSGLPKRRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGV |
Parental | SLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG |
SLQELNPEMGTDN.SENWKEVHKMVV.SAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG | |
Retrocopy | SLQELNPEMGTDNNSENWKEVHKMVVKSAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG |
Parental | MYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL |
MYGIENEVFLSLPCILN.RGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL | |
Retrocopy | MYGIENEVFLSLPCILNTRGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 92 .61 RPM |
SRP017611_brain | 0 .08 RPM | 105 .67 RPM |
SRP017611_kidney | 0 .53 RPM | 329 .39 RPM |
SRP017611_liver | 0 .00 RPM | 7 .47 RPM |