RetrogeneDB ID: | retro_cfam_701 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 16:30009622..30010324(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSCAFG00000012195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.02 % |
Parental protein coverage: | 65.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | YGTMATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQ |
.GTMATLKEKLIAPVAEEEAAIP.NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQ | |
Retrocopy | WGTMATLKEKLIAPVAEEEAAIPTNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQ |
Parental | HGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVV |
HGSLFLQTPKIVADKDYSV.ANSKIVVVTAGVRQQEGESRLNLVQRNVNVF.FIIPQIVKYSPDCIIIVV | |
Retrocopy | HGSLFLQTPKIVADKDYSVPANSKIVVVTAGVRQQEGESRLNLVQRNVNVF*FIIPQIVKYSPDCIIIVV |
Parental | SNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNV |
SN.VDILT.VTWKL.GLPKHRVIGSGCNLDS.RF.Y.MAEKLGIHPSSCHGWIL.EHGDSSVAVWS.VNV | |
Retrocopy | SNSVDILTHVTWKLNGLPKHRVIGSGCNLDSVRFCYFMAEKLGIHPSSCHGWILREHGDSSVAVWS*VNV |
Parental | AGVSLQELNPEMGTDNDSENWKEV |
A.VSLQELNPEMGTD.DSENWKEV | |
Retrocopy | ARVSLQELNPEMGTDKDSENWKEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 92 .61 RPM |
SRP017611_brain | 0 .00 RPM | 105 .67 RPM |
SRP017611_kidney | 0 .26 RPM | 329 .39 RPM |
SRP017611_liver | 0 .00 RPM | 7 .47 RPM |