RetrogeneDB ID: | retro_cfam_1700 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:48960421..48961132(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000017236 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSCAFG00000012195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.8 % |
Parental protein coverage: | 71.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS |
MATLKE.LIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL..EMMDLQHGS | |
Retrocopy | MATLKENLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLR-EMMDLQHGS |
Parental | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEG.SRLNLVQRN.NVFKFII.QIVKYSPDCIIIVVSNP | |
Retrocopy | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGDSRLNLVQRNINVFKFIILQIVKYSPDCIIIVVSNP |
Parental | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGV |
VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRY.MA.KLGIHPSSCHGWILGEHG.SSVAVWSGVNVAGV | |
Retrocopy | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYFMAKKLGIHPSSCHGWILGEHGNSSVAVWSGVNVAGV |
Parental | SLQELNPEMGTDNDSENWKEVHKMVVES |
SLQELNPEMG.DNDSENWKEVHKMVVES | |
Retrocopy | SLQELNPEMGIDNDSENWKEVHKMVVES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .25 RPM | 92 .61 RPM |
SRP017611_brain | 0 .16 RPM | 105 .67 RPM |
SRP017611_kidney | 0 .46 RPM | 329 .39 RPM |
SRP017611_liver | 0 .00 RPM | 7 .47 RPM |