RetrogeneDB ID: | retro_cfam_174 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:7016774..7017764(-) | ||
Located in intron of: | ENSCAFG00000006999 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000007002 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSCAFG00000012195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS |
MATLKEKLIAPVAEE.AAIPNNKIT.VGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG. | |
Retrocopy | MATLKEKLIAPVAEE-AAIPNNKITIVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGC |
Parental | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
LFLQTPKIVAD.DYSVTANSKI.VVTAGVRQQEG.S.LNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP | |
Retrocopy | LFLQTPKIVADNDYSVTANSKIMVVTAGVRQQEGKSHLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
Parental | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGV |
VDILTYVTWKLSGLPKHRVIGSGCNLDSARF.YLMAEKL.IHPSSCHGWILGEHGDSSVAVWSGVNVAGV | |
Retrocopy | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFHYLMAEKLRIHPSSCHGWILGEHGDSSVAVWSGVNVAGV |
Parental | SLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG |
SLQELNPEMGTDNDSENWKEV....VESAYEVIKLK.YTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG | |
Retrocopy | SLQELNPEMGTDNDSENWKEV----VESAYEVIKLKEYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG |
Parental | MYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL |
MYGI..EVFLSLPCILNARGLTSVINQKLKD.EVAQLKKSADTLWDIQKDLKD. | |
Retrocopy | MYGIKSEVFLSLPCILNARGLTSVINQKLKDNEVAQLKKSADTLWDIQKDLKDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 92 .61 RPM |
SRP017611_brain | 0 .16 RPM | 105 .67 RPM |
SRP017611_kidney | 0 .53 RPM | 329 .39 RPM |
SRP017611_liver | 0 .00 RPM | 7 .47 RPM |