RetrogeneDB ID: | retro_cfam_1068 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 22:16757362..16758034(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSCAFG00000012195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.56 % |
Parental protein coverage: | 63.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GTMATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH |
GTMATLKEKLIAPVAEE.A.IPNNKITVVGVGQVGMACAISILGKSLADELALV.VLEDKLKGEMMDLQH | |
Retrocopy | GTMATLKEKLIAPVAEE-AVIPNNKITVVGVGQVGMACAISILGKSLADELALVNVLEDKLKGEMMDLQH |
Parental | GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS |
GSLFLQTPKIV.DKDYSVTANSKIVVVTAGV.QQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS | |
Retrocopy | GSLFLQTPKIVPDKDYSVTANSKIVVVTAGVHQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS |
Parental | NPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVA |
NP.DILTYVTWKLSGLPKHRVIGSGCNLDSARFRY.MAEK.GIHPSS.HGWILGEHGDSSVAVWS.VNVA | |
Retrocopy | NPMDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYFMAEKFGIHPSSYHGWILGEHGDSSVAVWSRVNVA |
Parental | GVSLQELNPEMGTDN |
GVSLQELNPEMGTDN | |
Retrocopy | GVSLQELNPEMGTDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .34 RPM | 92 .61 RPM |
SRP017611_brain | 0 .24 RPM | 105 .67 RPM |
SRP017611_kidney | 0 .59 RPM | 329 .39 RPM |
SRP017611_liver | 0 .00 RPM | 7 .47 RPM |