RetrogeneDB ID: | retro_cfam_93 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 13:28303742..28304747(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000001098 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSCAFG00000012195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS |
MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVG.ACAISILGKSLADELALVDVLEDKLKGEMMDLQ.GS | |
Retrocopy | MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGVACAISILGKSLADELALVDVLEDKLKGEMMDLQDGS |
Parental | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGES.LNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP | |
Retrocopy | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
Parental | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGV |
VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLM.EKLGIHP.SCHGWILGEHGDSSV.VWSGVNVAGV | |
Retrocopy | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMVEKLGIHPRSCHGWILGEHGDSSVVVWSGVNVAGV |
Parental | SLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG |
SLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYT.WAIGLSVADLI.SMLKNLSRIHPVSTMVKG | |
Retrocopy | SLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTSWAIGLSVADLIASMLKNLSRIHPVSTMVKG |
Parental | MYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL |
M.GIENEVFLSLPCILN..GLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL | |
Retrocopy | MCGIENEVFLSLPCILNTWGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 2 .35 RPM | 92 .61 RPM |
SRP017611_brain | 2 .22 RPM | 105 .67 RPM |
SRP017611_kidney | 10 .17 RPM | 329 .39 RPM |
SRP017611_liver | 0 .51 RPM | 7 .47 RPM |