Parental gene: | ENSCAFG00000009211 |
| Aliases: | None |
| Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:E2RA64] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 21:40831916..40841198(+) |
>ENSCAFG00000009211
ATGAGTGAATCCTCAGGAAGCTATACTTACACCCAAACATCAATATTATTTTTCCATGCCAAGATTCCTTTTGGTTCTAA
GTCCAAAATGGCAACGCTCAAGGATCAGCTGATTCAGAATCTTCTTAAGGAAGACCATACCCCCCAGAATAAGATTACAG
TTGTTGGGGTTGGTGCTGTTGGCATGGCTTGTGCCATCAGTATCTTAATGAAGGACTTGGCAGATGAACTCGCTCTTGTT
GATGTCATGGAAGACAAATTGAAGGGAGAGATGATGGATCTCCAGCACGGCAGCCTTTTCCTTAGAACACCAAAAATTGT
CTCTGGCAAAGACTACAATGTGACTGCAAACTCCAAGCTGGTTATTATCACGGCTGGGGCACGTCAGCAAGAGGGAGAAA
GTCGTCTTAATTTGGTCCAGCGTAACGTGAACATCTTTAAGTTCATCATTCCTAATATTGTCAAATACAGCCCAAACTGC
AAGTTGCTTGTTGTTTCCAATCCAGTGGATATCTTGACCTATGTGGCTTGGAAGATAAGTGGCTTTCCCAAAAACCGAGT
TATTGGAAGTGGTTGCAATCTGGATTCAGCCCGGTTCCGTTACCTAATGGGGGAAAGGTTGGGAGTTCACCCGTTAAGCT
GTCATGGGTGGGTCCTTGGAGAGCATGGAGACTCCAGTGTGCCTGTATGGAGTGGAGTAAATGTTGCTGGTGTCTCTCTG
AAGAATCTGCACCCTGACCTAGGCACTGATGCAGATAAGGAACAGTGGAAACAGGTTCACAAACAGGTGGTTGACAGTGC
CTATGAGGTGATCAAACTAAAAGGCTACACTTCCTGGGCCATTGGACTCTCTGTGGCAGATTTGGCAGAAAGTATAATGA
AGAATCTTAGGCGGGTGCATCCAATTTCCACCATGATTAAGGGTCTCTATGGAATAAAAGATGATGTCTTCCTTAGTGTT
CCTTGCATCTTGGGACAGAATGGAATCTCTGATGTTGTGAAGGTGACTCTGACTCCTGAGGAAGAGGCCCGTTTAAAGAA
GAGTGCAGATACACTTTGGGGGATCCAAAAGGAGCTGCAGTTTTAA
ATGAGTGAATCCTCAGGAAGCTATACTTACACCCAAACATCAATATTATTTTTCCATGCCAAGATTCCTTTTGGTTCTAA
GTCCAAAATGGCAACGCTCAAGGATCAGCTGATTCAGAATCTTCTTAAGGAAGACCATACCCCCCAGAATAAGATTACAG
TTGTTGGGGTTGGTGCTGTTGGCATGGCTTGTGCCATCAGTATCTTAATGAAGGACTTGGCAGATGAACTCGCTCTTGTT
GATGTCATGGAAGACAAATTGAAGGGAGAGATGATGGATCTCCAGCACGGCAGCCTTTTCCTTAGAACACCAAAAATTGT
CTCTGGCAAAGACTACAATGTGACTGCAAACTCCAAGCTGGTTATTATCACGGCTGGGGCACGTCAGCAAGAGGGAGAAA
GTCGTCTTAATTTGGTCCAGCGTAACGTGAACATCTTTAAGTTCATCATTCCTAATATTGTCAAATACAGCCCAAACTGC
AAGTTGCTTGTTGTTTCCAATCCAGTGGATATCTTGACCTATGTGGCTTGGAAGATAAGTGGCTTTCCCAAAAACCGAGT
TATTGGAAGTGGTTGCAATCTGGATTCAGCCCGGTTCCGTTACCTAATGGGGGAAAGGTTGGGAGTTCACCCGTTAAGCT
GTCATGGGTGGGTCCTTGGAGAGCATGGAGACTCCAGTGTGCCTGTATGGAGTGGAGTAAATGTTGCTGGTGTCTCTCTG
AAGAATCTGCACCCTGACCTAGGCACTGATGCAGATAAGGAACAGTGGAAACAGGTTCACAAACAGGTGGTTGACAGTGC
CTATGAGGTGATCAAACTAAAAGGCTACACTTCCTGGGCCATTGGACTCTCTGTGGCAGATTTGGCAGAAAGTATAATGA
AGAATCTTAGGCGGGTGCATCCAATTTCCACCATGATTAAGGGTCTCTATGGAATAAAAGATGATGTCTTCCTTAGTGTT
CCTTGCATCTTGGGACAGAATGGAATCTCTGATGTTGTGAAGGTGACTCTGACTCCTGAGGAAGAGGCCCGTTTAAAGAA
GAGTGCAGATACACTTTGGGGGATCCAAAAGGAGCTGCAGTTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 167 .60 RPM |
| SRP017611_kidney | 598 .03 RPM |
| SRP017611_liver | 198 .69 RPM |
| SRP012049_cerebellum | 130 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000012195 | within_species_paralog | 9 retrogenes | |
| Dipodomys ordii | ENSDORG00000003524 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000015735 | ortholog_one2many | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016343 | possible_ortholog | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000000014 | possible_ortholog | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000008062 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_309 | 72.29 | 91.97 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1061 | 90.88 | 94.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1149 | 92.44 | 80.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1182 | 82.15 | 81.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1317 | 56.85 | 92.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1617 | 81.91 | 51.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_1946 | 90.65 | 88.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_2006 | 69.53 | 63.43 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000009211 retrocopies