RetrogeneDB ID: | retro_cfam_1836 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:13173796..13174492(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSCAFG00000012195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.4 % |
Parental protein coverage: | 64.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | GTMATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH |
GTMATLKEKL..PVAEE.A.IP.N.IT.VG.GQVGMACAI.ILGKSLADELALVDVLEDKL..EMMDL.. | |
Retrocopy | GTMATLKEKLFSPVAEE*ATIPHNEITIVGIGQVGMACAITILGKSLADELALVDVLEDKLREEMMDL*Y |
Parental | GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS |
GSLFLQT..IVA.KD.S.TANSKIVVV.AG..QQEG.S.LNLVQRNVNVFKFIIPQ.VK.SPDCI.IVVS | |
Retrocopy | GSLFLQTSNIVAYKD-SMTANSKIVVVIAGGHQQEGKSQLNLVQRNVNVFKFIIPQTVKFSPDCILIVVS |
Parental | NPVDILTYVTWKLSGLP--KHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVN |
N.VDIL.YVTWKLSGL...KH..IGSG..LDSARF.Y.MAEKLGIHPSS.HGWI.GEHG.SSVA...GVN | |
Retrocopy | NIVDILKYVTWKLSGLSDWKHNEIGSGYKLDSARFHYVMAEKLGIHPSSRHGWIWGEHGNSSVALKGGVN |
Parental | VAGVSLQELNPEMGTDNDSENWK |
VAG.S.QELN.EMGTD.DS.NWK | |
Retrocopy | VAGISFQELNLEMGTDDDSKNWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 92 .61 RPM |
SRP017611_brain | 0 .00 RPM | 105 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 329 .39 RPM |
SRP017611_liver | 0 .00 RPM | 7 .47 RPM |