RetrogeneDB ID: | retro_cjac_2508 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 5:23678616..23679222(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022344 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSCJAG00000000304 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 79.31 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE |
MT.WET.APAVAETPDI.LFGK.STDDVQIN.ISLQD.IAVKEKY.KYLPHSAGR.AAKRF.KA.CPIVE | |
Retrocopy | MT*WETGAPAVAETPDIELFGKRSTDDVQINNISLQDNIAVKEKYSKYLPHSAGRFAAKRFCKARCPIVE |
Parental | RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVD |
RLTNSMMMHG..NG.KL.TVRIVKHAF..IHLLTGENPLQ.LVN..INSGPREDSTR.GRA.T....... | |
Retrocopy | RLTNSMMMHGCSNGEKLVTVRIVKHAFDFIHLLTGENPLQLLVNSVINSGPREDSTRMGRAETETTGCGR |
Parental | VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN |
V.PL..VNQAIWLL.TG.REAAFRNIKT..ECLADE.INA.K..SNSYAIKK.DEL..VAKSN | |
Retrocopy | V-PLHQVNQAIWLLGTGVREAAFRNIKTVPECLADEFINATKCFSNSYAIKKEDELACVAKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 87 .24 RPM |
SRP051959_heart | 0 .00 RPM | 62 .78 RPM |
SRP051959_kidney | 0 .00 RPM | 52 .71 RPM |
SRP051959_liver | 0 .00 RPM | 101 .91 RPM |
SRP051959_lung | 0 .00 RPM | 73 .32 RPM |
SRP051959_lymph_node | 0 .00 RPM | 123 .97 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 112 .09 RPM |
SRP051959_spleen | 0 .00 RPM | 104 .37 RPM |