RetrogeneDB ID: | retro_tsyr_1258 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_367910:559..1005(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSTSYG00000000076 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 79.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIV- |
MTEW.TA.PAVAE.PDIKLFGKWSTDDVQI..ISLQDYIA.KE..A..LPHSAGRYAAKRFRKAQ.P... | |
Retrocopy | MTEWGTAVPAVAEIPDIKLFGKWSTDDVQIDHISLQDYIAMKEQQAEHLPHSAGRYAAKRFRKAQRPVG< |
Parental | ERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAV |
ERL.NSMMMH.RN.GKKLM.VRI.KHA.E.IHLLTG.NPLQV.VNAI..SGP.EDSTR.G.AGTVRRQAV | |
Retrocopy | ERLPNSMMMHVRNHGKKLMSVRIAKHALETIHLLTGKNPLQVPVNAILSSGPWEDSTRVGPAGTVRRQAV |
Parental | DVSPLRRVNQ |
.VSP..RVNQ | |
Retrocopy | AVSPPHRVNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002366 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000304 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000013543 | 1 retrocopy | |
Homo sapiens | ENSG00000083845 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000004258 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015400 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000012641 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008729 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008308 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000011921 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013088 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000011034 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010500 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000011591 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005935 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016955 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000076 | 2 retrocopies |
retro_tsyr_1258 , retro_tsyr_1981,
|
Tursiops truncatus | ENSTTRG00000001991 | 1 retrocopy |