Parental gene:

RPS5, ENSPPYG00000010500

Aliases:None
Description:ribosomal protein S5 [Source:HGNC Symbol;Acc:10426]
Organism:Orangutan (Pongo abelii)
Coordinates:19:60515039..60522201(+)


>ENSPPYG00000010500
ATGACCGAGTGGGAGACAGCAGCACCAGCGGTGGCAGAGACCCCAGACATCAAAGCTTTTTGGGAAAGTGGAGCACCGAT
GATGTGCAGATCAATGATTATTTCCCTGCAGGATTACATTGCAGTGAAGGAGAAGTATGCCAAGTACCTGCCTCACAGTG
CAGGGCGGTATGCCGCCAAACGCTTCCGCAAAGCTCAGTGTCCCATTGTGGAGCGCCTGACTAACTCCATGATGATGCAC
GGCCGCAACAACGGCAAGAAGCTCATGACTGTGCGCATCGTCAAGCATGCCTTCGAGATCATACACCTGCTCACAGGCGA
GAACCCTCTGCAGGTCCTGGTGAATGCCATCATCAACAGTGGTCCCCGGGAGGACTCCACACGCATTGGGCGCGCCGGGA
CTGTGAGACGACAGGCTGTGGATGTGTCCCCACTGCGCCGTGTGAACCAGGCCATCTGGCTGCTGTGCACAGGCGCTCGT
GAGGCTGCCTTCCGGAACATTAAGACCATTGCTGAGTGCCTGGCAGATGAGCTCATCAATGCTGCCAAGGGCTCCTCCAA
CTCTTATGCCATTAAGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 48 .82 RPM
SRP007412_cerebellum 68 .70 RPM
SRP007412_heart 81 .58 RPM
SRP007412_kidney 131 .03 RPM
SRP007412_liver 155 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002366 ortholog_one2one 1 retrogene
retro_cfam_1355,
Callithrix jacchus ENSCJAG00000000304 ortholog_one2one 6 retrogenes
retro_cjac_1463, retro_cjac_2049, retro_cjac_2050, retro_cjac_2508, retro_cjac_4105, retro_cjac_599,
Echinops telfairi ENSETEG00000013543 ortholog_one2one 1 retrogene
retro_etel_912,
Homo sapiens ENSG00000083845 ortholog_one2one 5 retrogenes
retro_hsap_2524, retro_hsap_2526, retro_hsap_3649, retro_hsap_3976, retro_hsap_4224,
Gorilla gorilla ENSGGOG00000004258 ortholog_one2one 4 retrogenes
retro_ggor_1577, retro_ggor_2465, retro_ggor_2828, retro_ggor_2942,
Macropus eugenii ENSMEUG00000015400 ortholog_one2one 3 retrogenes
retro_meug_1075, retro_meug_1792, retro_meug_347,
Myotis lucifugus ENSMLUG00000012641 ortholog_one2one 1 retrogene
retro_mluc_2266,
Macaca mulatta ENSMMUG00000008729 ortholog_one2one 3 retrogenes
retro_mmul_1595, retro_mmul_2525, retro_mmul_77,
Mustela putorius furo ENSMPUG00000008308 ortholog_one2one 1 retrogene
retro_mputfur_1316,
Ornithorhynchus anatinus ENSOANG00000011921 ortholog_one2one 1 retrogene
retro_oana_83,
Otolemur garnettii ENSOGAG00000013088 ortholog_one2one 2 retrogenes
retro_ogar_1711, retro_ogar_3461,
Procavia capensis ENSPCAG00000011034 ortholog_one2one 2 retrogenes
retro_pcap_168, retro_pcap_58,
Pan troglodytes ENSPTRG00000011591 ortholog_one2one 6 retrogenes
retro_ptro_1469, retro_ptro_1471, retro_ptro_2474, retro_ptro_2700, retro_ptro_2868, retro_ptro_3152,
Ictidomys tridecemlineatus ENSSTOG00000005935 ortholog_one2one 1 retrogene
retro_itri_1742,
Tupaia belangeri ENSTBEG00000016955 ortholog_one2one 2 retrogenes
retro_tbel_1127, retro_tbel_1169,
Tarsius syrichta ENSTSYG00000000076 ortholog_one2one 2 retrogenes
retro_tsyr_1258, retro_tsyr_1981,
Tursiops truncatus ENSTTRG00000001991 ortholog_one2one 1 retrogene
retro_ttru_106,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_375 75.37 63.90
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2. retro_pabe_1857 83.90 100.00
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3. retro_pabe_1858 77.14 85.78
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4. retro_pabe_2996 91.75 95.10
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5. retro_pabe_3270 87.44 100.00
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6. retro_pabe_3413 75.37 99.51
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7. retro_pabe_3683 63.39 54.90
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Download FASTA sequences of all ENSPPYG00000010500 retrocopies