RetrogeneDB ID: | retro_mmul_2525 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:108572328..108572660(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000023220 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3975 | ||
Ensembl ID: | ENSMMUG00000008729 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S5 [Source:RefSeq peptide;Acc:NP_001252648] |
Percent Identity: | 74.34 % |
Parental protein coverage: | 54.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IVKHAFEIIHLLTGENPLQVLVNAIINSGPR-EDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE |
.VKHAF.IIHLLTG.NPLQVLVNAII.SGP..EDST.I..A.TVR.Q.VD.SPL..VNQAIWLL.TGA.E | |
Retrocopy | LVKHAFKIIHLLTGKNPLQVLVNAIIKSGPG<EDSTYIEQAETVRQQDVDMSPLCHVNQAIWLLYTGASE |
Parental | AAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN |
AAF.NIKT..E.LAD.LIN.AK.SSNSYAI.KK..LE..AKSN | |
Retrocopy | AAFQNIKTVTEYLADKLINTAKSSSNSYAIEKK-KLELMAKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 48 .63 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 112 .57 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .95 RPM |
SRP007412_heart | 0 .00 RPM | 101 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 140 .96 RPM |
SRP007412_liver | 0 .00 RPM | 271 .58 RPM |
SRP007412_testis | 0 .00 RPM | 78 .74 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3152 |
Gorilla gorilla | retro_ggor_2942 |
Pongo abelii | retro_pabe_3683 |
Callithrix jacchus | retro_cjac_4105 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002366 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000304 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000013543 | 1 retrocopy | |
Homo sapiens | ENSG00000083845 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000004258 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015400 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000012641 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008729 | 3 retrocopies |
retro_mmul_1595, retro_mmul_2525 , retro_mmul_77,
|
Mustela putorius furo | ENSMPUG00000008308 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000011921 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013088 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000011034 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010500 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000011591 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005935 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016955 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000076 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001991 | 1 retrocopy |