RetrogeneDB ID: | retro_pabe_1858 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 21:35145832..35146354(-) | ||
Located in intron of: | ENSPPYG00000011386 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSPPYG00000010500 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 77.14 % |
Parental protein coverage: | 85.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFE |
QI.DI.LQD.IAVKEKYAKYLPH.A..YAAK.F.KAQCPIVE.LTNSM.MH..NN.KKLMTV.I.K.AF. | |
Retrocopy | QISDIALQDSIAVKEKYAKYLPHNAWPYAAKCFCKAQCPIVESLTNSMIMHVHNNSKKLMTVCIIKYAFH |
Parental | IIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKT |
.IHLLTGENPLQVLVNAIIN.GP.EDST..G.AGTVR.QAVDVSPL.RVNQ..WLLCTG..E.A.R.IKT | |
Retrocopy | FIHLLTGENPLQVLVNAIINDGPQEDSTGFGWAGTVR*QAVDVSPLHRVNQTTWLLCTGTLEGALREIKT |
Parental | IAECLADELINAAKGSSNSYAIKKKDELERVAKSN |
IAEC.ADELI.A.KGSS.S.AI..KDELE.VAKSN | |
Retrocopy | IAECPADELITATKGSSDSFAI-NKDELECVAKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .17 RPM | 48 .82 RPM |
SRP007412_cerebellum | 0 .00 RPM | 68 .70 RPM |
SRP007412_heart | 0 .09 RPM | 81 .58 RPM |
SRP007412_kidney | 0 .23 RPM | 131 .03 RPM |
SRP007412_liver | 0 .00 RPM | 155 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2526 |
Pan troglodytes | retro_ptro_1471 |
Macaca mulatta | retro_mmul_1595 |
Callithrix jacchus | retro_cjac_2050 |