RetrogeneDB ID: | retro_pabe_3270 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:83175708..83176318(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSPPYG00000010500 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 87.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MTEWETAAPAVAETPDIKAF-WE-SGAPMMCRSMIISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCP |
MTEWETAAP.VAE.PDIK.F.WE.SGAPMMCRS...SLQDY.AVKEKYAKYLP.SA.RYAAKRFRKAQCP | |
Retrocopy | MTEWETAAPVVAENPDIKLF<WE<SGAPMMCRSET-SLQDYTAVKEKYAKYLPCSAERYAAKRFRKAQCP |
Parental | IVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQ |
IVE.LT.SMMMHGRNN.KKLM..RIVKHAFEII.LLTG.NPLQVLVNAIINSGPREDSTRIGRA...RRQ | |
Retrocopy | IVECLTYSMMMHGRNNRKKLMIARIVKHAFEIIQLLTGDNPLQVLVNAIINSGPREDSTRIGRARIMRRQ |
Parental | AVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR |
AVDVSPLRRVNQAIW..CTGA.EAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELE.VAK.NR | |
Retrocopy | AVDVSPLRRVNQAIWPQCTGAPEAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELESVAKCNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 48 .82 RPM |
SRP007412_cerebellum | 0 .36 RPM | 68 .70 RPM |
SRP007412_heart | 0 .00 RPM | 81 .58 RPM |
SRP007412_kidney | 0 .10 RPM | 131 .03 RPM |
SRP007412_liver | 0 .03 RPM | 155 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3976 |
Macaca mulatta | retro_mmul_77 |