RetrogeneDB ID: | retro_pabe_3683 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:108820759..108821089(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSPPYG00000010500 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 63.39 % |
Parental protein coverage: | 54.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREA |
.VKHAF.IIHLL.G.N.LQVLVNAII.SGP......I......R.Q.VD.SPL..VNQAIWLL.TG...A | |
Retrocopy | LVKHAFKIIHLLMGKNSLQVLVNAIIKSGPGR-TPHISSKLRLRQQDVDMSPLCHVNQAIWLLYTGTSKA |
Parental | AFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN |
AF.NIKTI.E.L.D.LI..AK.SSNSYAI..K..LE..AKSN | |
Retrocopy | AFQNIKTITEYLTDKLISTAKNSSNSYAI-EKNNLELMAKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 48 .82 RPM |
SRP007412_cerebellum | 0 .00 RPM | 68 .70 RPM |
SRP007412_heart | 0 .00 RPM | 81 .58 RPM |
SRP007412_kidney | 0 .00 RPM | 131 .03 RPM |
SRP007412_liver | 0 .00 RPM | 155 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3152 |
Gorilla gorilla | retro_ggor_2942 |
Macaca mulatta | retro_mmul_2525 |
Callithrix jacchus | retro_cjac_4105 |